myRT

myRT report for GCA_013782105.1_ASM1378210v1

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Seq: CP056191.1 Klebsiella pneumoniae strain RHBSTW-00995 chromosome, complete genome (5185437 bp)
Overview 1 RT 1: 3114761-3120124 bp Neighborhood of RT #1 [3114761, 3120177] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Feature: gene Location: 3114761-3116026 bp Ori: QLR38734.1 Feature: domain Description: umuC Location: 3114764-3116024 bp Feature: domain Description: umuC Location: 31 1 4764-31 1 6024 bp Feature: gene Location: 3116029-3116448 bp Ori: QLR38735.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3116032-3116443 bp Feature: domain Description: PRK1 0276 Location: 31 1 6032-31 1 6443 bp Feature: gene Location: 3116527-3118014 bp Ori: QLR38736.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3116932-3117622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 6932-31 1 7622 bp Feature: gene Location: 3118628-3118870 bp Ori: QLR38737.1 Feature: domain Description: DinI Location: 3118679-3118859 bp Feature: domain Description: DinI Location: 31 1 8679-31 1 8859 bp Feature: gene Location: 3119041-3120177 bp Ori: QLR40664.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3119221-3120124 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 31 1 9221 -31 201 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789)

Seq: CP056192.1 Klebsiella pneumoniae strain RHBSTW-00995 plasmid pRHBSTW-00995_2, complete sequence (246880 bp)
Overview 1 RT 1: 236541-242016 bp Neighborhood of RT #1 [236541, 242021] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Feature: gene Location: 236541-237212 bp Ori: QLR40965.1 Feature: domain Description: Plasmid_stab_B Location: 236556-236763 bp Feature: domain Description: Plasmid_stab_B Location: 2 36556-2 36763 bp Feature: domain Description: Plasmid_stab_B Location: 236868-237075 bp Feature: domain Description: Plasmid_stab_B Location: 2 36868-2 37075 bp Feature: gene Location: 237215-238186 bp Ori: QLR40966.1 Feature: domain Description: StbA Location: 237218-238163 bp Feature: domain Description: StbA Location: 2 372 18-2 38163 bp Feature: gene Location: 238435-239922 bp Ori: QLR40967.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238840-239530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 38840-2 39530 bp Feature: gene Location: 240325-240750 bp Ori: QLR40968.1 Gene: umuD Feature: domain Description: PRK10276 Location: 240328-240736 bp Feature: domain Description: PRK102 76 Location: 2 4032 8-2 40736 bp Feature: gene Location: 240750-242021 bp Ori: QLR40969.1 Feature: domain Description: umuC Location: 240753-242016 bp Feature: domain Description: umuC Location: 2 40753-2 42 016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP056193.1 Klebsiella pneumoniae strain RHBSTW-00995 plasmid pRHBSTW-00995_3, complete sequence (72044 bp)
Overview 1 RT 1: 13833-18557 bp Neighborhood of RT #1 [13833, 18595] umuC PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 13833-15104 bp Ori: QLR41008.1 Feature: domain Description: umuC Location: 13836-15096 bp Feature: domain Description: umuC Location: 13 83 6-15096 bp Feature: gene Location: 15104-15535 bp Ori: QLR41009.1 Gene: umuD Feature: domain Description: PRK10276 Location: 15155-15518 bp Feature: domain Description: PRK10276 Location: 15155-15518 bp Feature: gene Location: 15941-17428 bp Ori: QLR41010.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16346-17036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 46-1703 6 bp Feature: gene Location: 17580-18277 bp Feature: domain Description: Zn_Tnp_IS1 Location: 17586-17688 bp Feature: domain Description: Zn_Tnp_IS1 Location: 17586-17688 bp Feature: domain Description: HTH_Tnp_IS1 Location: 17709-17841 bp Feature: domain Description: HTH_Tnp_IS1 Location: 17709-17841 bp Feature: gene Location: 18287-18595 bp Feature: domain Description: Rep_3 Location: 18293-18557 bp Feature: domain Description: Rep_3 Location: 18293 -18557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051)