myRT

myRT report for GCA_013782845.1_ASM1378284v1

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Seq: CP056209.1 Citrobacter freundii strain RHBSTW-00985 plasmid pRHBSTW-00985_2, complete sequence (291255 bp)
Overview 1 RT 1: 14244-19211 bp Neighborhood of RT #1 [14244, 19211] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 14244-14750 bp Feature: gene Location: 15219-15895 bp Feature: domain Description: InsE Location: 15231-15480 bp Feature: domain Description: InsE Location: 1 5231 -1 5480 bp Feature: gene Location: 16568-18076 bp Ori: QLR55290.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16826-17558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6826-1 7558 bp Feature: domain Description: GIIM Note: maturase Location: 17633-17831 bp Feature: domain Description: GIIM Note: maturase Location: 1 7633-1 7831 bp Feature: gene Location: 18157-18633 bp Feature: domain Description: PHA02517 Location: 18160-18625 bp Feature: domain Description: PHA0251 7 Location: 1 81 60-1 8625 bp Feature: gene Location: 18786-19211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP056208.1 Citrobacter freundii strain RHBSTW-00985 chromosome, complete genome (4829251 bp)
Overview 1 RT 1: 2937181-2944300 bp 2 RT 2: 3219271-3224289 bp 3 RT 3: 3794112-3799614 bp 4 RT 4: 3812763-3818490 bp Neighborhood of RT #1 [2937181, 2944350] InsE RVT-GII GIIM PHA02517 ZnMc_MMP_like_1 Neighborhood of RT #2 [3219271, 3224315] IS5 PHA02517 RVT-GII GIIM InsE Resolvase Neighborhood of RT #3 [3794112, 3799619] IS5 InsE RVT-GII GIIM fruct_sucro_rep Neighborhood of RT #4 [3812763, 3818501] PRK09692 PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 2937181-2939631 bp Feature: gene Location: 2939669-2940356 bp Feature: domain Description: InsE Location: 2939681-2939945 bp Feature: domain Description: InsE Location: 2 939681-2 939945 bp Feature: gene Location: 2941029-2942537 bp Ori: QLR54933.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2941287-2942019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9412 87-2 942 019 bp Feature: domain Description: GIIM Note: maturase Location: 2942094-2942292 bp Feature: domain Description: GIIM Note: maturase Location: 2 942 094-2 942 2 92 bp Feature: gene Location: 2942618-2943074 bp Feature: domain Description: PHA02517 Location: 2942621-2942717 bp Feature: domain Description: PHA02 517 Location: 2 942 62 1-2 942 717 bp Feature: gene Location: 2943397-2944350 bp Ori: QLR54934.1 Feature: domain Description: ZnMc_MMP_like_1 Location: 2943790-2944300 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 2 943790-2 944300 bp Feature: gene Location: 3219271-3220251 bp Ori: QLR53461.1 Feature: domain Description: IS5 Location: 3219460-3220237 bp Feature: domain Description: IS5 Location: 32 19460-32 2 02 37 bp Feature: gene Location: 3220659-3221147 bp Feature: domain Description: PHA02517 Location: 3220662-3221127 bp Feature: domain Description: PHA02 517 Location: 32 2 0662 -32 2 112 7 bp Feature: gene Location: 3221228-3222736 bp Ori: QLR54943.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221486-3222218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 1486-32 2 2 2 18 bp Feature: domain Description: GIIM Note: maturase Location: 3222293-3222491 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 2 2 93-32 2 2 491 bp Feature: gene Location: 3223409-3224100 bp Feature: domain Description: InsE Location: 3223418-3223691 bp Feature: domain Description: InsE Location: 32 2 3418-32 2 3691 bp Feature: gene Location: 3224157-3224315 bp Ori: QLR50616.1 Feature: domain Description: Resolvase Location: 3224172-3224289 bp Feature: domain Description: Resolvase Location: 32 2 4172 -32 2 42 89 bp Feature: gene Location: 3794112-3795092 bp Ori: QLR53951.1 Feature: domain Description: IS5 Location: 3794301-3795078 bp Feature: domain Description: IS5 Location: 3794301-3795078 bp Feature: gene Location: 3795312-3796000 bp Feature: domain Description: InsE Location: 3795321-3795606 bp Feature: domain Description: InsE Location: 379532 1-3795606 bp Feature: gene Location: 3796673-3798181 bp Ori: QLR54966.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3796931-3797663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3796931-3797663 bp Feature: domain Description: GIIM Note: maturase Location: 3797738-3797936 bp Feature: domain Description: GIIM Note: maturase Location: 3797738-3797936 bp Feature: gene Location: 3798346-3798479 bp Feature: gene Location: 3798615-3799619 bp Ori: QLR53952.1 Feature: domain Description: fruct_sucro_rep Location: 3798636-3799614 bp Feature: domain Description: fruct_sucro_rep Location: 3798636-3799614 bp Feature: gene Location: 3812763-3813959 bp Ori: QLR53964.1 Feature: domain Description: PRK09692 Location: 3812772-3813930 bp Feature: domain Description: PRK09692 Location: 3812 772 -3813930 bp Feature: gene Location: 3814165-3814653 bp Feature: domain Description: PHA02517 Location: 3814168-3814633 bp Feature: domain Description: PHA02 517 Location: 3814168-3814633 bp Feature: gene Location: 3814734-3816242 bp Ori: QLR54967.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3814992-3815724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3814992 -381572 4 bp Feature: domain Description: GIIM Note: maturase Location: 3815799-3815997 bp Feature: domain Description: GIIM Note: maturase Location: 3815799-3815997 bp Feature: gene Location: 3816915-3817340 bp Feature: domain Description: PHA02517 Location: 3817005-3817341 bp Feature: domain Description: PHA02 517 Location: 3817005-3817341 bp Feature: gene Location: 3817350-3818501 bp Ori: QLR53965.1 Feature: domain Description: HTH_38 Location: 3817359-3817473 bp Feature: domain Description: HTH_38 Location: 3817359-3817473 bp Feature: domain Description: Tra8 Location: 3817509-3818490 bp Feature: domain Description: Tra8 Location: 3817509-3818490 bp Sorry, your browser does not 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Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ZnMc_MMP_like_1 (cd04279), IS5 (COG3039), Resolvase (smart00857), fruct_sucro_rep (TIGR02417), PRK09692 (Integrase; provisional), HTH_38 (pfam13936)
Tra8 (COG2826)