myRT

myRT report for GCA_013784645.1_ASM1378464v1

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Seq: CP056451.1 Citrobacter freundii strain RHBSTW-00502 chromosome, complete genome (4892927 bp)
Overview 1 RT 1: 699536-704053 bp 2 RT 2: 1217885-1221928 bp 3 RT 3: 2326133-2331169 bp 4 RT 4: 3838471-3843665 bp Neighborhood of RT #1 [699536, 704247] COG3547 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [1217885, 1221928] Inovirus_Gp2 InsE RVT-GII GIIM PHA02517 Neighborhood of RT #3 [2326133, 2331169] COG3547 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [3838471, 3843676] fruct_sucro_rep RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 699536-700618 bp Ori: QLX92274.1 Feature: domain Description: COG3547 Location: 699581-700544 bp Feature: domain Description: COG3547 Location: 699581 -700544 bp Feature: gene Location: 700899-701078 bp Feature: domain Description: PHA02517 Location: 700902-701079 bp Feature: domain Description: PHA0251 7 Location: 700902-701 079 bp Feature: gene Location: 701159-702667 bp Ori: QLX95983.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701417-702149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 41 7-7021 49 bp Feature: domain Description: GIIM Note: maturase Location: 702224-702422 bp Feature: domain Description: GIIM Note: maturase Location: 702224-702422 bp Feature: gene Location: 703338-703767 bp Feature: gene Location: 703864-704247 bp Ori: QLX92275.1 Feature: domain Description: InsE Location: 703882-704053 bp Feature: domain Description: InsE Location: 703882-704053 bp Feature: gene Location: 1217885-1218088 bp Ori: QLX92727.1 Feature: domain Description: Inovirus_Gp2 Location: 1217942-1218083 bp Feature: domain Description: Inovirus_Gp2 Location: 1 21 7942-1 21 8083 bp Feature: gene Location: 1218156-1218844 bp Feature: domain Description: InsE Location: 1218165-1218450 bp Feature: domain Description: InsE Location: 1 21 81 65-1 21 8450 bp Feature: gene Location: 1219517-1221025 bp Ori: QLX95997.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219775-1220507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 9775-1 220507 bp Feature: domain Description: GIIM Note: maturase Location: 1220582-1220780 bp Feature: domain Description: GIIM Note: maturase Location: 1 220582-1 220780 bp Feature: gene Location: 1221106-1221594 bp Feature: domain Description: PHA02517 Location: 1221109-1221574 bp Feature: domain Description: PHA0251 7 Location: 1 221 1 09-1 221 574 bp Feature: gene Location: 1221620-1221928 bp Feature: gene Location: 2326133-2327203 bp Ori: QLX93727.1 Feature: domain Description: COG3547 Location: 2326169-2327075 bp Feature: domain Description: COG3547 Location: 23261 69-2327075 bp Feature: gene Location: 2327415-2327687 bp Feature: domain Description: PHA02517 Location: 2327418-2327688 bp Feature: domain Description: PHA0251 7 Location: 232741 8-2327688 bp Feature: gene Location: 2327768-2329276 bp Ori: QLX96039.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2328026-2328758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2328026-2328758 bp Feature: domain Description: GIIM Note: maturase Location: 2328833-2329031 bp Feature: domain Description: GIIM Note: maturase Location: 2328833-2329031 bp Feature: gene Location: 2329949-2330637 bp Feature: domain Description: InsE Location: 2329958-2330243 bp Feature: domain Description: InsE Location: 2329958-2330243 bp Feature: gene Location: 2330705-2331169 bp Feature: gene Location: 3838471-3839475 bp Ori: QLX95064.1 Feature: domain Description: fruct_sucro_rep Location: 3838492-3839470 bp Feature: domain Description: fruct_sucro_rep Location: 3838492-3839470 bp Feature: gene Location: 3839611-3839744 bp Feature: gene Location: 3839909-3841417 bp Ori: QLX96106.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3840167-3840899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38401 67-3840899 bp Feature: domain Description: GIIM Note: maturase Location: 3840974-3841172 bp Feature: domain Description: GIIM Note: maturase Location: 3840974-3841 1 72 bp Feature: gene Location: 3842090-3842515 bp Feature: domain Description: PHA02517 Location: 3842180-3842516 bp Feature: domain Description: PHA0251 7 Location: 38421 80-384251 6 bp Feature: gene Location: 3842525-3843676 bp Ori: QLX95065.1 Feature: domain Description: HTH_38 Location: 3842534-3842648 bp Feature: domain Description: HTH_38 Location: 3842534-3842648 bp Feature: domain Description: Tra8 Location: 3842684-3843665 bp Feature: domain Description: Tra8 Location: 3842684-3843665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Inovirus_Gp2 (pfam11726), fruct_sucro_rep (TIGR02417), HTH_38 (pfam13936), Tra8 (COG2826)