myRT

myRT report for GCA_013790265.1_ASM1379026v1

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Seq: CP056809.1 Citrobacter freundii strain RHBSTW-00162 chromosome, complete genome (5066655 bp)
Overview 1 RT 1: 234581-239462 bp 2 RT 2: 883388-888713 bp 3 RT 3: 1277589-1282353 bp 4 RT 4: 2099296-2104072 bp 5 RT 5: 2306105-2311001 bp 6 RT 6: 3066057-3073175 bp 7 RT 7: 3981157-3986351 bp 8 RT 8: 4710455-4715123 bp Neighborhood of RT #1 [234581, 240034] Tn7_Tnp_TnsA_N PHA02517 RVT-GII GIIM InsE PIN_VapC-like Neighborhood of RT #2 [883388, 889137] PRK09835 PHA02517 RVT-GII GIIM InsE InsA Neighborhood of RT #3 [1277589, 1282352] PRK09692 PHA02517 RVT-GII GIIM InsE PRK09692 Neighborhood of RT #4 [2099296, 2104110] Terminase_3 PHA02517 RVT-GII GIIM InsE phage_term_2 Neighborhood of RT #5 [2306105, 2311009] PHA02517 RVT-GII GIIM InsE PRK10700 Neighborhood of RT #6 [3066057, 3073225] InsE RVT-GII GIIM PHA02517 ZnMc_MMP_like_1 Neighborhood of RT #7 [3981157, 3986362] fruct_sucro_rep RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #8 [4710455, 4715155] MalY PHA02517 RVT-GII GIIM InsE MalY Feature: gene Location: 234581-235381 bp Ori: QLZ05443.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 234806-235082 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 234806-235082 bp Feature: gene Location: 235396-235884 bp Feature: domain Description: PHA02517 Location: 235399-235864 bp Feature: domain Description: PHA0251 7 Location: 235399-235864 bp Feature: gene Location: 235965-237473 bp Ori: QLZ09673.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236223-236955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236223-236955 bp Feature: domain Description: GIIM Note: maturase Location: 237030-237228 bp Feature: domain Description: GIIM Note: maturase Location: 237030-237228 bp Feature: gene Location: 238146-238834 bp Feature: domain Description: InsE Location: 238155-238440 bp Feature: domain Description: InsE Location: 2381 55-238440 bp Feature: gene Location: 238913-240034 bp Ori: QLZ05444.1 Feature: domain Description: PIN_VapC-like Location: 238943-239462 bp Feature: domain Description: PIN_VapC-like Location: 238943-239462 bp Feature: gene Location: 883388-884842 bp Ori: QLZ06042.1 Gene: silS Feature: domain Description: PRK09835 Location: 883391-884762 bp Feature: domain Description: PRK09835 Location: 883391 -884762 bp Feature: gene Location: 884764-885252 bp Feature: domain Description: PHA02517 Location: 884767-885232 bp Feature: domain Description: PHA0251 7 Location: 884767-885232 bp Feature: gene Location: 885333-886841 bp Ori: QLZ09692.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885591-886323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885591 -886323 bp Feature: domain Description: GIIM Note: maturase Location: 886398-886596 bp Feature: domain Description: GIIM Note: maturase Location: 886398-886596 bp Feature: gene Location: 887514-888202 bp Feature: domain Description: InsE Location: 887523-887808 bp Feature: domain Description: InsE Location: 887523-887808 bp Feature: gene Location: 888440-889137 bp Feature: domain Description: InsA Location: 888446-888713 bp Feature: domain Description: InsA Location: 888446-88871 3 bp Feature: gene Location: 1277589-1278470 bp Feature: domain Description: PRK09692 Location: 1277592-1278465 bp Feature: domain Description: PRK09692 Location: 1 277592-1 278465 bp Feature: gene Location: 1278484-1278972 bp Feature: domain Description: PHA02517 Location: 1278487-1278952 bp Feature: domain Description: PHA0251 7 Location: 1 278487-1 278952 bp Feature: gene Location: 1279053-1280561 bp Ori: QLZ09701.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279311-1280043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27931 1 -1 280043 bp Feature: domain Description: GIIM Note: maturase Location: 1280118-1280316 bp Feature: domain Description: GIIM Note: maturase Location: 1 2801 1 8-1 28031 6 bp Feature: gene Location: 1281234-1281922 bp Feature: domain Description: InsE Location: 1281243-1281528 bp Feature: domain Description: InsE Location: 1 281 243-1 281 528 bp Feature: gene Location: 1281996-1282352 bp Feature: domain Description: PRK09692 Location: 1281999-1282353 bp Feature: domain Description: PRK09692 Location: 1 281 999-1 282353 bp Feature: gene Location: 2099296-2099619 bp Feature: domain Description: Terminase_3 Location: 2099365-2099590 bp Feature: domain Description: Terminase_3 Location: 2099365-2099590 bp Feature: gene Location: 2099624-2100112 bp Feature: domain Description: PHA02517 Location: 2099627-2100092 bp Feature: domain Description: PHA0251 7 Location: 2099627-21 00092 bp Feature: gene Location: 2100193-2101701 bp Ori: QLZ09731.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100451-2101183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 00451 -21 01 1 83 bp Feature: domain Description: GIIM Note: maturase Location: 2101258-2101456 bp Feature: domain Description: GIIM Note: maturase Location: 21 01 258-21 01 456 bp Feature: gene Location: 2102374-2103062 bp Feature: domain Description: InsE Location: 2102383-2102668 bp Feature: domain Description: InsE Location: 21 02383-21 02668 bp Feature: gene Location: 2103136-2104110 bp Feature: domain Description: phage_term_2 Location: 2103139-2104072 bp Feature: domain Description: phage_term_2 Location: 21 031 39-21 04072 bp Feature: gene Location: 2306105-2306320 bp Feature: gene Location: 2306330-2306818 bp Feature: domain Description: PHA02517 Location: 2306333-2306798 bp Feature: domain Description: PHA0251 7 Location: 2306333-2306798 bp Feature: gene Location: 2306899-2308407 bp Ori: QLZ09740.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2307157-2307889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23071 57-2307889 bp Feature: domain Description: GIIM Note: maturase Location: 2307964-2308162 bp Feature: domain Description: GIIM Note: maturase Location: 2307964-23081 62 bp Feature: gene Location: 2309080-2309768 bp Feature: domain Description: InsE Location: 2309089-2309374 bp Feature: domain Description: InsE Location: 2309089-2309374 bp Feature: gene Location: 2310134-2311009 bp Ori: QLZ07283.1 Gene: rluB Feature: domain Description: PRK10700 Location: 2310137-2311001 bp Feature: domain Description: PRK1 0700 Location: 231 01 37-231 1 001 bp Feature: gene Location: 3066057-3068528 bp Feature: gene Location: 3068544-3069231 bp Feature: domain Description: InsE Location: 3068556-3068820 bp Feature: domain Description: InsE Location: 3068556-3068820 bp Feature: gene Location: 3069904-3071412 bp Ori: QLZ09790.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3070162-3070894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30701 62-3070894 bp Feature: domain Description: GIIM Note: maturase Location: 3070969-3071167 bp Feature: domain Description: GIIM Note: maturase Location: 3070969-3071 1 67 bp Feature: gene Location: 3071493-3071949 bp Feature: domain Description: PHA02517 Location: 3071496-3071592 bp Feature: domain Description: PHA0251 7 Location: 3071 496-3071 592 bp Feature: gene Location: 3072272-3073225 bp Ori: QLZ09791.1 Feature: domain Description: ZnMc_MMP_like_1 Location: 3072665-3073175 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 3072665-30731 75 bp Feature: gene Location: 3981157-3982161 bp Ori: QLZ08753.1 Feature: domain Description: fruct_sucro_rep Location: 3981178-3982156 bp Feature: domain Description: fruct_sucro_rep Location: 3981 1 78-39821 56 bp Feature: gene Location: 3982297-3982430 bp Feature: gene Location: 3982595-3984103 bp Ori: QLZ09821.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3982853-3983585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3982853-3983585 bp Feature: domain Description: GIIM Note: maturase Location: 3983660-3983858 bp Feature: domain Description: GIIM Note: maturase Location: 3983660-3983858 bp Feature: gene Location: 3984776-3985201 bp Feature: domain Description: PHA02517 Location: 3984866-3985202 bp Feature: domain Description: PHA0251 7 Location: 3984866-3985202 bp Feature: gene Location: 3985211-3986362 bp Ori: QLZ08754.1 Feature: domain Description: HTH_38 Location: 3985220-3985334 bp Feature: domain Description: HTH_38 Location: 3985220-3985334 bp Feature: domain Description: Tra8 Location: 3985370-3986351 bp Feature: domain Description: Tra8 Location: 3985370-3986351 bp Feature: gene Location: 4710455-4711480 bp Feature: domain Description: MalY Location: 4710467-4711475 bp Feature: domain Description: MalY Location: 471 0467-471 1 475 bp Feature: gene Location: 4711490-4711978 bp Feature: domain Description: PHA02517 Location: 4711493-4711958 bp Feature: domain Description: PHA0251 7 Location: 471 1 493-471 1 958 bp Feature: gene Location: 4712059-4713567 bp Ori: QLZ09850.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4712317-4713049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 231 7-471 3049 bp Feature: domain Description: GIIM Note: maturase Location: 4713124-4713322 bp Feature: domain Description: GIIM Note: maturase Location: 471 31 24-471 3322 bp Feature: gene Location: 4714240-4714928 bp Feature: domain Description: InsE Location: 4714249-4714534 bp Feature: domain Description: InsE Location: 471 4249-471 4534 bp Feature: gene Location: 4715003-4715155 bp Feature: domain Description: MalY Location: 4715009-4715123 bp Feature: domain Description: MalY Location: 471 5009-471 51 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tn7_Tnp_TnsA_N (pfam08722), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PIN_VapC-like (cd18715), PRK09835 (Cu(+)/Ag(+) sensor histidine kinase), InsA (COG3677), PRK09692 (Integrase; provisional), Terminase_3 (pfam04466)
phage_term_2 (TIGR01547), PRK10700 (23S rRNA pseudouridine(2605) synthase RluB), ZnMc_MMP_like_1 (cd04279), fruct_sucro_rep (TIGR02417), HTH_38 (pfam13936), Tra8 (COG2826), MalY (COG1168)