myRT

myRT report for GCA_013791615.1_ASM1379161v1

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Seq: CP056839.1 Citrobacter freundii strain RHBSTW-00126 chromosome, complete genome (4906122 bp)
Overview 1 RT 1: 272042-277983 bp 2 RT 2: 1082930-1088457 bp 3 RT 3: 2308966-2314907 bp 4 RT 4: 2679318-2684876 bp 5 RT 5: 4474802-4479671 bp Neighborhood of RT #1 [272042, 277983] HTH_DEOR ribokinase PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [1082930, 1088495] XerC PHA02517 RVT-GII GIIM InsE PRK13381 Neighborhood of RT #3 [2308966, 2314906] PRK14990 PHA02517 RVT-GII GIIM InsE dmsA_ynfE Neighborhood of RT #4 [2679318, 2684941] InsE RVT-GII GIIM PHA02517 EAL Neighborhood of RT #5 [4474802, 4479671] COG4688 InsE RVT-GII GIIM PHA02517 Feature: gene Location: 272042-273274 bp Ori: QLZ44459.1 Feature: domain Description: HTH_DEOR Location: 272057-272207 bp Feature: domain Description: HTH_DEOR Location: 272057-272207 bp Feature: domain Description: ribokinase Location: 272321-273170 bp Feature: domain Description: ribokinase Location: 272321 -2731 70 bp Feature: gene Location: 273788-274264 bp Feature: domain Description: PHA02517 Location: 273791-274256 bp Feature: domain Description: PHA0251 7 Location: 273791 -274256 bp Feature: gene Location: 274345-275853 bp Ori: QLZ48534.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274603-275335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274603-275335 bp Feature: domain Description: GIIM Note: maturase Location: 275410-275632 bp Feature: domain Description: GIIM Note: maturase Location: 27541 0-275632 bp Feature: gene Location: 276526-277205 bp Feature: domain Description: InsE Location: 276538-276796 bp Feature: domain Description: InsE Location: 276538-276796 bp Feature: gene Location: 277270-277983 bp Feature: gene Location: 1082930-1083778 bp Feature: domain Description: XerC Location: 1083035-1083737 bp Feature: domain Description: XerC Location: 1 083035-1 083737 bp Feature: gene Location: 1083788-1084264 bp Feature: domain Description: PHA02517 Location: 1083791-1084256 bp Feature: domain Description: PHA0251 7 Location: 1 083791 -1 084256 bp Feature: gene Location: 1084345-1085853 bp Ori: QLZ48560.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084603-1085335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 084603-1 085335 bp Feature: domain Description: GIIM Note: maturase Location: 1085410-1085632 bp Feature: domain Description: GIIM Note: maturase Location: 1 08541 0-1 085632 bp Feature: gene Location: 1086526-1087205 bp Feature: domain Description: InsE Location: 1086538-1086796 bp Feature: domain Description: InsE Location: 1 086538-1 086796 bp Feature: gene Location: 1087275-1088495 bp Ori: QLZ48561.1 Gene: pepT Feature: domain Description: PRK13381 Location: 1087287-1088457 bp Feature: domain Description: PRK1 3381 Location: 1 087287-1 088457 bp Feature: gene Location: 2308966-2310936 bp Feature: domain Description: PRK14990 Location: 2308969-2310934 bp Feature: domain Description: PRK1 4990 Location: 2308969-231 0934 bp Feature: gene Location: 2310949-2311425 bp Feature: domain Description: PHA02517 Location: 2310952-2311417 bp Feature: domain Description: PHA0251 7 Location: 231 0952-231 1 41 7 bp Feature: gene Location: 2311506-2313014 bp Ori: QLZ48612.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2311764-2312496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 1 764-231 2496 bp Feature: domain Description: GIIM Note: maturase Location: 2312571-2312793 bp Feature: domain Description: GIIM Note: maturase Location: 231 2571 -231 2793 bp Feature: gene Location: 2313687-2314366 bp Feature: domain Description: InsE Location: 2313699-2313957 bp Feature: domain Description: InsE Location: 231 3699-231 3957 bp Feature: gene Location: 2314430-2314906 bp Feature: domain Description: dmsA_ynfE Location: 2314460-2314907 bp Feature: domain Description: dmsA_ynfE Location: 231 4460-231 4907 bp Feature: gene Location: 2679318-2680433 bp Feature: gene Location: 2680493-2681172 bp Feature: domain Description: InsE Location: 2680505-2680763 bp Feature: domain Description: InsE Location: 2680505-2680763 bp Feature: gene Location: 2681845-2683353 bp Ori: QLZ48626.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682103-2682835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26821 03-2682835 bp Feature: domain Description: GIIM Note: maturase Location: 2682910-2683132 bp Feature: domain Description: GIIM Note: maturase Location: 268291 0-26831 32 bp Feature: gene Location: 2683434-2683910 bp Feature: domain Description: PHA02517 Location: 2683437-2683902 bp Feature: domain Description: PHA0251 7 Location: 2683437-2683902 bp Feature: gene Location: 2683925-2684941 bp Feature: domain Description: EAL Location: 2684225-2684876 bp Feature: domain Description: EAL Location: 2684225-2684876 bp Feature: gene Location: 4474802-4475533 bp Feature: domain Description: COG4688 Location: 4474808-4475165 bp Feature: domain Description: COG4688 Location: 4474808-44751 65 bp Feature: gene Location: 4475595-4476274 bp Feature: domain Description: InsE Location: 4475607-4475865 bp Feature: domain Description: InsE Location: 4475607-4475865 bp Feature: gene Location: 4476947-4478455 bp Ori: QLZ48691.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4477205-4477937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4477205-4477937 bp Feature: domain Description: GIIM Note: maturase Location: 4478012-4478234 bp Feature: domain Description: GIIM Note: maturase Location: 447801 2-4478234 bp Feature: gene Location: 4478536-4479012 bp Feature: domain Description: PHA02517 Location: 4478539-4479004 bp Feature: domain Description: PHA0251 7 Location: 4478539-4479004 bp Feature: gene Location: 4479030-4479671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_DEOR (smart00420), ribokinase (PTZ00292), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), XerC (COG4973), PRK13381 (peptidase T; Provisional), PRK14990 (anaerobic dimethyl sulfoxide reductase subunit A; Provisional), dmsA_ynfE (TIGR02166)
EAL (smart00052), COG4688 (Uncharacterized protein )

Seq: CP056840.1 Citrobacter freundii strain RHBSTW-00126 plasmid pRHBSTW-00126_2, complete sequence (63642 bp)
Overview 1 RT 1: 19703-23776 bp Neighborhood of RT #1 [19703, 23776] PRK12361 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 19703-19927 bp Ori: QLZ48728.1 Feature: domain Description: PRK12361 Location: 19715-19922 bp Feature: domain Description: PRK12 361 Location: 19715-1992 2 bp Feature: gene Location: 20009-20485 bp Feature: domain Description: PHA02517 Location: 20012-20477 bp Feature: domain Description: PHA02 517 Location: 2 0012 -2 0477 bp Feature: gene Location: 20566-22074 bp Ori: QLZ48772.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20824-21556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 082 4-2 1556 bp Feature: domain Description: GIIM Note: maturase Location: 21631-21853 bp Feature: domain Description: GIIM Note: maturase Location: 2 1631-2 1853 bp Feature: gene Location: 22747-23426 bp Feature: domain Description: InsE Location: 22759-23017 bp Feature: domain Description: InsE Location: 2 2 759-2 3017 bp Feature: gene Location: 23471-23776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12361 (hypothetical protein; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP056841.1 Citrobacter freundii strain RHBSTW-00126 plasmid pRHBSTW-00126_3, complete sequence (61353 bp)
Overview 1 RT 1: 37627-42351 bp Neighborhood of RT #1 [37627, 42389] umuC PRK10276 RVT-GII InsA Rep_3 Feature: gene Location: 37627-38898 bp Ori: QLZ48807.1 Feature: domain Description: umuC Location: 37630-38890 bp Feature: domain Description: umuC Location: 3 763 0-3 8890 bp Feature: gene Location: 38898-39329 bp Ori: QLZ48808.1 Gene: umuD Feature: domain Description: PRK10276 Location: 38949-39312 bp Feature: domain Description: PRK10276 Location: 3 8949-3 93 12 bp Feature: gene Location: 39735-41222 bp Ori: QLZ48809.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40140-40830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40140-4083 0 bp Feature: gene Location: 41374-42071 bp Feature: domain Description: InsA Location: 41380-41647 bp Feature: domain Description: InsA Location: 413 80-41647 bp Feature: gene Location: 42081-42389 bp Feature: domain Description: Rep_3 Location: 42087-42351 bp Feature: domain Description: Rep_3 Location: 42087-423 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), Rep_3 (pfam01051)