myRT

myRT report for GCA_013792545.1_ASM1379254v1

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Seq: CP056855.1 Klebsiella pneumoniae strain RHBSTW-00113 plasmid pRHBSTW-00113_2, complete sequence (188591 bp)
Overview 1 RT 1: 176928-182447 bp Neighborhood of RT #1 [176928, 182461] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 PRK10276 Feature: gene Location: 176928-177599 bp Ori: QLZ75942.1 Feature: domain Description: Plasmid_stab_B Location: 176943-177150 bp Feature: domain Description: Plasmid_stab_B Location: 1 76943-1 771 50 bp Feature: domain Description: Plasmid_stab_B Location: 177255-177462 bp Feature: domain Description: Plasmid_stab_B Location: 1 77255-1 77462 bp Feature: gene Location: 177602-178573 bp Ori: QLZ75943.1 Feature: domain Description: StbA Location: 177605-178550 bp Feature: domain Description: StbA Location: 1 77605-1 78550 bp Feature: gene Location: 178822-180309 bp Ori: QLZ75944.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179227-179917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79227-1 7991 7 bp Feature: gene Location: 180753-181973 bp Ori: QLZ75945.1 Feature: domain Description: zf-ISL3 Location: 180885-181011 bp Feature: domain Description: zf-ISL3 Location: 1 80885-1 81 01 1 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 181029-181176 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 81 029-1 81 1 76 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 181227-181932 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 81 227-1 81 932 bp Feature: gene Location: 182036-182461 bp Ori: QLZ75946.1 Gene: umuD Feature: domain Description: PRK10276 Location: 182039-182447 bp Feature: domain Description: PRK1 0276 Location: 1 82039-1 82447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP056854.1 Klebsiella pneumoniae strain RHBSTW-00113 chromosome, complete genome (5126929 bp)
Overview 1 RT 1: 1162536-1167289 bp 2 RT 2: 1710866-1717336 bp 3 RT 3: 2878036-2884279 bp 4 RT 4: 3050021-3055384 bp 5 RT 5: 3161461-3165981 bp Neighborhood of RT #1 [1162536, 1167289] DDE_Tnp_1_5 RVT-Retrons Neighborhood of RT #2 [1710866, 1717350] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [2878036, 2884296] umuC PRK10276 RVT-GII DDE_Tnp_1_5 PinE Neighborhood of RT #4 [3050021, 3055437] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3161461, 3165983] PRK10598 PRK05451 RVT-GII PRK10597 bssS Feature: gene Location: 1162536-1163504 bp Ori: QLZ72082.1 Feature: domain Description: DDE_Tnp_1_5 Location: 1162638-1162971 bp Feature: domain Description: DDE_Tnp_1_5 Location: 1162 638-1162 971 bp Feature: gene Location: 1163506-1163907 bp Feature: gene Location: 1164054-1165217 bp Ori: QLZ72084.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1164279-1164954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11642 79-1164954 bp Feature: gene Location: 1165406-1166701 bp Feature: gene Location: 1166930-1167289 bp Feature: gene Location: 1710866-1712290 bp Ori: QLZ72538.1 Gene: sbcB Feature: domain Description: SbcB Location: 1710872-1712288 bp Feature: domain Description: SbcB Location: 1710872 -1712 2 88 bp Feature: gene Location: 1712471-1713634 bp Ori: QLZ75607.1 Gene: dacD Feature: domain Description: dacD Location: 1712474-1713629 bp Feature: domain Description: dacD Location: 1712 474-171362 9 bp Feature: gene Location: 1714151-1715638 bp Ori: QLZ72539.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1714556-1715246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1714556-17152 46 bp Feature: gene Location: 1715720-1716193 bp Ori: QLZ72540.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1715723-1716182 bp Feature: domain Description: PRK10016 Location: 171572 3-1716182 bp Feature: gene Location: 1716292-1717350 bp Ori: QLZ72541.1 Feature: domain Description: YccC Location: 1716298-1717336 bp Feature: domain Description: YccC Location: 17162 98-1717336 bp Feature: gene Location: 2878036-2879301 bp Ori: QLZ73598.1 Feature: domain Description: umuC Location: 2878039-2879299 bp Feature: domain Description: umuC Location: 2 878039-2 8792 99 bp Feature: gene Location: 2879303-2879722 bp Ori: QLZ73599.1 Gene: umuD Feature: domain Description: PRK10276 Location: 2879306-2879717 bp Feature: domain Description: PRK102 76 Location: 2 879306-2 879717 bp Feature: gene Location: 2879802-2881289 bp Ori: QLZ73600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880207-2880897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8802 07-2 880897 bp Feature: gene Location: 2882760-2883728 bp Ori: QLZ73601.1 Feature: domain Description: DDE_Tnp_1_5 Location: 2882862-2883195 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2 882 862 -2 883195 bp Feature: gene Location: 2883769-2884296 bp Ori: QLZ73602.1 Feature: domain Description: PinE Location: 2883778-2884279 bp Feature: domain Description: PinE Location: 2 883778-2 8842 79 bp Feature: gene Location: 3050021-3051286 bp Ori: QLZ73767.1 Feature: domain Description: umuC Location: 3050024-3051284 bp Feature: domain Description: umuC Location: 305002 4-30512 84 bp Feature: gene Location: 3051289-3051708 bp Ori: QLZ73768.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3051292-3051703 bp Feature: domain Description: PRK102 76 Location: 30512 92 -3051703 bp Feature: gene Location: 3051787-3053274 bp Ori: QLZ73769.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052192-3052882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052 192 -3052 882 bp Feature: gene Location: 3053888-3054130 bp Ori: QLZ73770.1 Feature: domain Description: DinI Location: 3053939-3054119 bp Feature: domain Description: DinI Location: 3053939-3054119 bp Feature: gene Location: 3054301-3055437 bp Ori: QLZ75690.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3054481-3055384 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3054481-3055384 bp Feature: gene Location: 3161461-3162021 bp Ori: QLZ73872.1 Feature: domain Description: PRK10598 Location: 3161464-3162019 bp Feature: domain Description: PRK10598 Location: 3161464-3162 019 bp Feature: gene Location: 3162147-3163193 bp Ori: QLZ73873.1 Gene: pyrC Feature: domain Description: PRK05451 Location: 3162162-3163188 bp Feature: domain Description: PRK05451 Location: 3162 162 -3163188 bp Feature: gene Location: 3163286-3164773 bp Ori: QLZ73874.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163691-3164381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163691-3164381 bp Feature: gene Location: 3165175-3165426 bp Ori: QLZ73875.1 Gene: dinI Feature: domain Description: PRK10597 Location: 3165178-3165415 bp Feature: domain Description: PRK10597 Location: 3165178-3165415 bp Feature: gene Location: 3165729-3165983 bp Ori: QLZ75701.1 Gene: bssS Feature: domain Description: bssS Location: 3165732-3165981 bp Feature: domain Description: bssS Location: 3165732 -3165981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), RVT-Retrons, SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961)
DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), bssS (PRK12301)

Seq: CP056858.1 Klebsiella pneumoniae strain RHBSTW-00113 plasmid pRHBSTW-00113_5, complete sequence (53039 bp)
Overview 1 RT 1: 46444-52631 bp Neighborhood of RT #1 [46444, 52639] Rep_3 InsA RVT-GII PRK10276 umuC Feature: gene Location: 46444-46752 bp Feature: domain Description: Rep_3 Location: 46450-46714 bp Feature: domain Description: Rep_3 Location: 46450-46714 bp Feature: gene Location: 48209-48893 bp Feature: domain Description: InsA Location: 48215-48482 bp Feature: domain Description: InsA Location: 48215-48482 bp Feature: gene Location: 49045-50532 bp Ori: QLZ76178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49450-50140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49450-50140 bp Feature: gene Location: 50937-51368 bp Ori: QLZ76179.1 Gene: umuD Feature: domain Description: PRK10276 Location: 50988-51351 bp Feature: domain Description: PRK10276 Location: 50988-513 51 bp Feature: gene Location: 51368-52639 bp Ori: QLZ76180.1 Feature: domain Description: umuC Location: 51371-52631 bp Feature: domain Description: umuC Location: 513 71-5263 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP056856.1 Klebsiella pneumoniae strain RHBSTW-00113 plasmid pRHBSTW-00113_3, complete sequence (115230 bp)
Overview 1 RT 1: 22886-27777 bp Neighborhood of RT #1 [22886, 27788] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 22886-23221 bp Feature: gene Location: 23348-23773 bp Ori: QLZ75982.1 Feature: domain Description: Antirestrict Location: 23480-23771 bp Feature: domain Description: Antirestrict Location: 234 80-23771 bp Feature: gene Location: 24210-25697 bp Ori: QLZ75983.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24615-25305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 615-25305 bp Feature: gene Location: 26095-26535 bp Ori: QLZ75984.1 Gene: mucA Feature: domain Description: PRK10276 Location: 26134-26506 bp Feature: domain Description: PRK10276 Location: 26134 -26506 bp Feature: gene Location: 26523-27788 bp Ori: QLZ75985.1 Gene: mucB Feature: domain Description: umuC Location: 26526-27777 bp Feature: domain Description: umuC Location: 26526-27777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)