myRT

myRT report for GCA_013796805.1_ASM1379680v1

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Seq: CP056888.1 Citrobacter sp. RHBSTW-00053 chromosome, complete genome (5167268 bp)
Overview 1 RT 1: 615414-621884 bp 2 RT 2: 2043868-2050838 bp 3 RT 3: 2192445-2197311 bp 4 RT 4: 4014414-4019608 bp Neighborhood of RT #1 [615414, 621889] HTH_38 Tra8 RVT-GII GIIM PHA02517 PRK10341 Neighborhood of RT #2 [2043868, 2050840] RVT-GII GIIM HTH_Tnp_1 HTH_21 PRK15057 Neighborhood of RT #3 [2192445, 2197313] PHA02517 RVT-GII GIIM InsE PRK15463 Neighborhood of RT #4 [4014414, 4019619] fruct_sucro_rep RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 615414-616565 bp Ori: QMA16639.1 Feature: domain Description: HTH_38 Location: 615423-615537 bp Feature: domain Description: HTH_38 Location: 61 5423-61 5537 bp Feature: domain Description: Tra8 Location: 615573-616554 bp Feature: domain Description: Tra8 Location: 61 5573-61 6554 bp Feature: gene Location: 616629-617058 bp Feature: gene Location: 617731-619239 bp Ori: QMA20645.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617989-618721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 7989-61 8721 bp Feature: domain Description: GIIM Note: maturase Location: 618796-618994 bp Feature: domain Description: GIIM Note: maturase Location: 61 8796-61 8994 bp Feature: gene Location: 619320-619805 bp Feature: domain Description: PHA02517 Location: 619332-619797 bp Feature: domain Description: PHA0251 7 Location: 61 9332-61 9797 bp Feature: gene Location: 620951-621889 bp Ori: QMA16640.1 Gene: tdcA Feature: domain Description: PRK10341 Location: 620954-621884 bp Feature: domain Description: PRK1 0341 Location: 620954-621 884 bp Feature: gene Location: 2043868-2045406 bp Feature: gene Location: 2045689-2046142 bp Feature: gene Location: 2046223-2047731 bp Ori: QMA20704.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046481-2047213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046481 -204721 3 bp Feature: domain Description: GIIM Note: maturase Location: 2047288-2047486 bp Feature: domain Description: GIIM Note: maturase Location: 2047288-2047486 bp Feature: gene Location: 2048404-2049089 bp Feature: domain Description: HTH_Tnp_1 Location: 2048416-2048611 bp Feature: domain Description: HTH_Tnp_1 Location: 204841 6-204861 1 bp Feature: domain Description: HTH_21 Location: 2048815-2048959 bp Feature: domain Description: HTH_21 Location: 204881 5-2048959 bp Feature: gene Location: 2049674-2050840 bp Ori: QMA17880.1 Gene: ugd Feature: domain Description: PRK15057 Location: 2049677-2050838 bp Feature: domain Description: PRK1 5057 Location: 2049677-2050838 bp Feature: gene Location: 2192445-2192912 bp Feature: gene Location: 2192965-2193423 bp Feature: domain Description: PHA02517 Location: 2192968-2193415 bp Feature: domain Description: PHA0251 7 Location: 21 92968-21 9341 5 bp Feature: gene Location: 2193504-2195012 bp Ori: QMA20717.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193762-2194494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 93762-21 94494 bp Feature: domain Description: GIIM Note: maturase Location: 2194569-2194767 bp Feature: domain Description: GIIM Note: maturase Location: 21 94569-21 94767 bp Feature: gene Location: 2195685-2196370 bp Feature: domain Description: InsE Location: 2195697-2195961 bp Feature: domain Description: InsE Location: 21 95697-21 95961 bp Feature: gene Location: 2197101-2197313 bp Ori: QMA18023.1 Gene: cspH Feature: domain Description: PRK15463 Location: 2197104-2197311 bp Feature: domain Description: PRK1 5463 Location: 21 971 04-21 9731 1 bp Feature: gene Location: 4014414-4015418 bp Ori: QMA19633.1 Feature: domain Description: fruct_sucro_rep Location: 4014435-4015413 bp Feature: domain Description: fruct_sucro_rep Location: 401 4435-401 541 3 bp Feature: gene Location: 4015554-4015687 bp Feature: gene Location: 4015852-4017360 bp Ori: QMA20805.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4016110-4016842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 61 1 0-401 6842 bp Feature: domain Description: GIIM Note: maturase Location: 4016917-4017115 bp Feature: domain Description: GIIM Note: maturase Location: 401 691 7-401 71 1 5 bp Feature: gene Location: 4018033-4018458 bp Feature: domain Description: PHA02517 Location: 4018123-4018459 bp Feature: domain Description: PHA0251 7 Location: 401 81 23-401 8459 bp Feature: gene Location: 4018468-4019619 bp Ori: QMA19634.1 Feature: domain Description: HTH_38 Location: 4018477-4018591 bp Feature: domain Description: HTH_38 Location: 401 8477-401 8591 bp Feature: domain Description: Tra8 Location: 4018627-4019608 bp Feature: domain Description: Tra8 Location: 401 8627-401 9608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK10341 (transcriptional regulator TdcA), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), InsE (COG2963)
PRK15463 (cold shock-like protein CspF; Provisional), fruct_sucro_rep (TIGR02417)