myRT

myRT report for GCA_013797345.1_ASM1379734v1

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Seq: CP056896.1 Citrobacter sp. RHBSTW-00021 chromosome, complete genome (5099714 bp)
Overview 1 RT 1: 3858738-3863932 bp 2 RT 2: 3976937-3983322 bp Neighborhood of RT #1 [3858738, 3863943] fruct_sucro_rep RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [3976937, 3983321] YeeA YeeA DDE_Tnp_IS66_C RVT-GII GIIM zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3858738-3859742 bp Ori: QMA29058.1 Feature: domain Description: fruct_sucro_rep Location: 3858759-3859737 bp Feature: domain Description: fruct_sucro_rep Location: 3858759-3859737 bp Feature: gene Location: 3859878-3860011 bp Feature: gene Location: 3860176-3861684 bp Ori: QMA30263.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860434-3861166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860434-3861 1 66 bp Feature: domain Description: GIIM Note: maturase Location: 3861241-3861439 bp Feature: domain Description: GIIM Note: maturase Location: 3861 241 -3861 439 bp Feature: gene Location: 3862357-3862782 bp Feature: domain Description: PHA02517 Location: 3862447-3862783 bp Feature: domain Description: PHA0251 7 Location: 3862447-3862783 bp Feature: gene Location: 3862792-3863943 bp Ori: QMA29059.1 Feature: domain Description: HTH_38 Location: 3862801-3862915 bp Feature: domain Description: HTH_38 Location: 3862801 -386291 5 bp Feature: domain Description: Tra8 Location: 3862951-3863932 bp Feature: domain Description: Tra8 Location: 3862951 -3863932 bp Feature: gene Location: 3976937-3979699 bp Ori: QMA29164.1 Feature: domain Description: YeeA Location: 3977753-3978056 bp Feature: domain Description: YeeA Location: 3977753-3978056 bp Feature: domain Description: YeeA Location: 3978374-3978671 bp Feature: domain Description: YeeA Location: 3978374-3978671 bp Feature: gene Location: 3980068-3980190 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3980113-3980188 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 39801 1 3-39801 88 bp Feature: gene Location: 3980273-3981505 bp Ori: QMA29165.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3980474-3981128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3980474-3981 1 28 bp Feature: domain Description: GIIM Note: maturase Location: 3981206-3981428 bp Feature: domain Description: GIIM Note: maturase Location: 3981 206-3981 428 bp Feature: gene Location: 3982018-3983097 bp Feature: domain Description: zf-IS66 Location: 3982096-3982225 bp Feature: domain Description: zf-IS66 Location: 3982096-3982225 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3982270-3983098 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3982270-3983098 bp Feature: gene Location: 3983094-3983321 bp Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 3983121-3983322 bp Feature: domain Description: TnpB_IS66 Location: 39831 21 -3983322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fruct_sucro_rep (TIGR02417), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826), YeeA (COG1002), DDE_Tnp_IS66_C (pfam13817), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
TnpB_IS66 (pfam05717)