myRT

myRT report for GCA_013819085.1_ASM1381908v1

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Seq: CP057212.1 Escherichia fergusonii strain RHB33-C07 plasmid pRHB33-C07_3, complete sequence (104967 bp)
Overview 1 RT 1: 40018-44553 bp Neighborhood of RT #1 [40018, 44558] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 DUF905 Feature: gene Location: 40018-40440 bp Ori: QME65798.1 Feature: domain Description: DUF1380 Location: 40021-40315 bp Feature: domain Description: DUF1 380 Location: 40021 -4031 5 bp Feature: gene Location: 40437-40628 bp Feature: gene Location: 40906-42573 bp Ori: QME65800.1 Gene: ltrA Feature: domain Description: RVT_N Location: 40954-41191 bp Feature: domain Description: RVT_N Location: 40954-41 1 91 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41242-41884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 242-41 884 bp Feature: domain Description: GIIM Note: maturase Location: 41935-42169 bp Feature: domain Description: GIIM Note: maturase Location: 41 935-421 69 bp Feature: domain Description: HNHc Note: nucleases Location: 42379-42538 bp Feature: domain Description: HNHc Note: nucleases Location: 42379-42538 bp Feature: gene Location: 43740-44267 bp Ori: QME65801.1 Feature: domain Description: PRK13732 Location: 43743-44265 bp Feature: domain Description: PRK1 3732 Location: 43743-44265 bp Feature: gene Location: 44325-44558 bp Ori: QME65802.1 Feature: domain Description: DUF905 Location: 44355-44553 bp Feature: domain Description: DUF905 Location: 44355-44553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP057211.1 Escherichia fergusonii strain RHB33-C07 plasmid pRHB33-C07_2, complete sequence (160081 bp)
Overview 1 RT 1: 97192-101859 bp Neighborhood of RT #1 [97192, 101859] PRK10276 DinI RVT_N RVT-GII YkfC HNHc DUF1281 Feature: gene Location: 97192-97629 bp Ori: QME65687.1 Gene: umuD Feature: domain Description: PRK10276 Location: 97249-97615 bp Feature: domain Description: PRK102 76 Location: 972 49-97615 bp Feature: gene Location: 97626-97874 bp Ori: QME65688.1 Feature: domain Description: DinI Location: 97683-97863 bp Feature: domain Description: DinI Location: 97683-97863 bp Feature: gene Location: 98897-100621 bp Ori: QME65689.1 Gene: ltrA Feature: domain Description: RVT_N Location: 98954-99191 bp Feature: domain Description: RVT_N Location: 98954-99191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99242-99890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 42 -99890 bp Feature: domain Description: YkfC Location: 100022-100178 bp Feature: domain Description: YkfC Location: 10002 2 -100178 bp Feature: domain Description: HNHc Note: nucleases Location: 100406-100565 bp Feature: domain Description: HNHc Note: nucleases Location: 100406-100565 bp Feature: gene Location: 100698-101593 bp Feature: domain Description: DUF1281 Location: 100767-100932 bp Feature: domain Description: DUF12 81 Location: 100767-100932 bp Feature: gene Location: 101590-101859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924)

Seq: CP057210.1 Escherichia fergusonii strain RHB33-C07 chromosome, complete genome (4729644 bp)
Overview 1 RT 1: 87232-91112 bp Neighborhood of RT #1 [87232, 91117] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 87232-87948 bp Ori: QME61362.1 Gene: rph Feature: domain Description: rph Location: 87235-87943 bp Feature: domain Description: rph Location: 8723 5-87943 bp Feature: gene Location: 88014-88655 bp Ori: QME61363.1 Gene: pyrE Feature: domain Description: pyrE Location: 88017-88650 bp Feature: domain Description: pyrE Location: 88017-88650 bp Feature: gene Location: 88953-89912 bp Ori: QME61364.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89088-89637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89088-8963 7 bp Feature: gene Location: 89956-90552 bp Ori: QME61365.1 Gene: slmA Feature: domain Description: slmA Location: 89962-90538 bp Feature: domain Description: slmA Location: 89962-9053 8 bp Feature: gene Location: 90659-91117 bp Ori: QME61366.1 Gene: dut Feature: domain Description: dut Location: 90665-91112 bp Feature: domain Description: dut Location: 90665-91112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)