myRT

myRT report for GCA_013820845.1_ASM1382084v1

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Seq: CP057243.1 Escherichia fergusonii strain RHB32-C05 chromosome, complete genome (4697820 bp)
Overview 1 RT 1: 87650-91530 bp Neighborhood of RT #1 [87650, 91535] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 87650-88366 bp Ori: QME97625.1 Gene: rph Feature: domain Description: rph Location: 87653-88361 bp Feature: domain Description: rph Location: 87653-88361 bp Feature: gene Location: 88432-89073 bp Ori: QME97626.1 Gene: pyrE Feature: domain Description: pyrE Location: 88435-89068 bp Feature: domain Description: pyrE Location: 88435-89068 bp Feature: gene Location: 89371-90330 bp Ori: QME97627.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89506-90055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89506-90055 bp Feature: gene Location: 90374-90970 bp Ori: QME97628.1 Gene: slmA Feature: domain Description: slmA Location: 90380-90956 bp Feature: domain Description: slmA Location: 90380-90956 bp Feature: gene Location: 91077-91535 bp Ori: QME97629.1 Gene: dut Feature: domain Description: dut Location: 91083-91530 bp Feature: domain Description: dut Location: 91 083-91 530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: CP057245.1 Escherichia fergusonii strain RHB32-C05 plasmid pRHB32-C05_3, complete sequence (116001 bp)
Overview 1 RT 1: 51052-55587 bp Neighborhood of RT #1 [51052, 55592] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 DUF905 Feature: gene Location: 51052-51474 bp Ori: QMF02043.1 Feature: domain Description: DUF1380 Location: 51055-51349 bp Feature: domain Description: DUF1380 Location: 51055-51349 bp Feature: gene Location: 51471-51662 bp Feature: gene Location: 51940-53607 bp Ori: QMF02045.1 Gene: ltrA Feature: domain Description: RVT_N Location: 51988-52225 bp Feature: domain Description: RVT_N Location: 51988-52 2 2 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52276-52918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 76-52 918 bp Feature: domain Description: GIIM Note: maturase Location: 52969-53203 bp Feature: domain Description: GIIM Note: maturase Location: 52 969-532 03 bp Feature: domain Description: HNHc Note: nucleases Location: 53413-53572 bp Feature: domain Description: HNHc Note: nucleases Location: 53413-53572 bp Feature: gene Location: 54774-55301 bp Ori: QMF02046.1 Feature: domain Description: PRK13732 Location: 54777-55299 bp Feature: domain Description: PRK13732 Location: 54777-552 99 bp Feature: gene Location: 55359-55592 bp Ori: QMF02047.1 Feature: domain Description: DUF905 Location: 55389-55587 bp Feature: domain Description: DUF905 Location: 55389-55587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP057244.1 Escherichia fergusonii strain RHB32-C05 plasmid pRHB32-C05_2, complete sequence (147532 bp)
Overview 1 RT 1: 127801-132454 bp Neighborhood of RT #1 [127801, 132468] DUF1281 RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 127801-128070 bp Feature: gene Location: 128067-128962 bp Feature: domain Description: DUF1281 Location: 128136-128301 bp Feature: domain Description: DUF1281 Location: 12813 6-1283 01 bp Feature: gene Location: 129039-130763 bp Ori: QMF01972.1 Gene: ltrA Feature: domain Description: RVT_N Location: 129096-129333 bp Feature: domain Description: RVT_N Location: 129096-1293 3 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129384-130032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1293 84-13 003 2 bp Feature: domain Description: YkfC Location: 130164-130320 bp Feature: domain Description: YkfC Location: 13 0164-13 03 20 bp Feature: domain Description: HNHc Note: nucleases Location: 130548-130707 bp Feature: domain Description: HNHc Note: nucleases Location: 13 0548-13 0707 bp Feature: gene Location: 131786-132034 bp Ori: QMF01973.1 Feature: domain Description: DinI Location: 131843-132023 bp Feature: domain Description: DinI Location: 13 1843 -13 2023 bp Feature: gene Location: 132031-132468 bp Ori: QMF01974.1 Gene: umuD Feature: domain Description: PRK10276 Location: 132088-132454 bp Feature: domain Description: PRK10276 Location: 13 2088-13 2454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)