myRT

myRT report for GCA_013825725.1_ASM1382572v1

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Seq: CP057311.1 Escherichia fergusonii strain RHB30-C07 chromosome, complete genome (4598742 bp)
Overview 1 RT 1: 1-5730 bp 2 RT 2: 2923263-2928155 bp 3 RT 3: 2947651-2951531 bp Neighborhood of RT #1 [1, 5738] Phage_GPA RVT-AbiP2 Q Neighborhood of RT #2 [2923263, 2928172] PRK09678 PRK09678 Psu RVT-UG17 SLATT_5 PRK09692 Neighborhood of RT #3 [2947651, 2951536] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 1-2277 bp Ori: QMF75917.1 Feature: domain Description: Phage_GPA Location: 400-1387 bp Feature: domain Description: Phage_GPA Location: 400-1 387 bp Feature: gene Location: 2765-4309 bp Ori: QMF75918.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3182-3635 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31 82-3635 bp Feature: gene Location: 4504-4665 bp Feature: gene Location: 4704-5738 bp Ori: QMF75920.1 Feature: domain Description: Q Location: 4707-5730 bp Feature: domain Description: Q Location: 4707-5730 bp Feature: gene Location: 2923263-2923763 bp Ori: QMF78519.1 Feature: domain Description: PRK09678 Location: 2923266-2923398 bp Feature: domain Description: PRK09678 Location: 2923266-2923398 bp Feature: domain Description: PRK09678 Location: 2923521-2923671 bp Feature: domain Description: PRK09678 Location: 2923521 -2923671 bp Feature: gene Location: 2923837-2924409 bp Ori: QMF78520.1 Feature: domain Description: Psu Location: 2923855-2924392 bp Feature: domain Description: Psu Location: 2923855-2924392 bp Feature: gene Location: 2924732-2926141 bp Ori: QMF78521.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2924969-2925581 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2924969-2925581 bp Feature: gene Location: 2926336-2926977 bp Ori: QMF78522.1 Feature: domain Description: SLATT_5 Location: 2926339-2926945 bp Feature: domain Description: SLATT_5 Location: 2926339-2926945 bp Feature: gene Location: 2926994-2928172 bp Ori: QMF78523.1 Feature: domain Description: PRK09692 Location: 2927003-2928155 bp Feature: domain Description: PRK09692 Location: 2927003-29281 55 bp Feature: gene Location: 2947651-2948367 bp Ori: QMF78538.1 Gene: rph Feature: domain Description: rph Location: 2947654-2948362 bp Feature: domain Description: rph Location: 2947654-2948362 bp Feature: gene Location: 2948433-2949074 bp Ori: QMF78539.1 Gene: pyrE Feature: domain Description: pyrE Location: 2948436-2949069 bp Feature: domain Description: pyrE Location: 2948436-2949069 bp Feature: gene Location: 2949372-2950331 bp Ori: QMF78540.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2949507-2950053 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2949507-2950053 bp Feature: gene Location: 2950375-2950971 bp Ori: QMF78541.1 Gene: slmA Feature: domain Description: slmA Location: 2950381-2950957 bp Feature: domain Description: slmA Location: 2950381 -2950957 bp Feature: gene Location: 2951078-2951536 bp Ori: QMF78542.1 Gene: dut Feature: domain Description: dut Location: 2951084-2951531 bp Feature: domain Description: dut Location: 2951 084-2951 531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536), PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional), rph (PRK00173), pyrE (TIGR00336)
RVT-Retrons, slmA (PRK09480), dut (TIGR00576)