myRT

myRT report for GCA_013834525.1_ASM1383452v1

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Seq: CP057464.1 Escherichia fergusonii strain RHB26-C03 plasmid pRHB26-C03_2, complete sequence (107745 bp)
Overview 1 RT 1: 17035-21629 bp 2 RT 2: 24202-28640 bp Neighborhood of RT #1 [17035, 21629] DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Neighborhood of RT #2 [24202, 28642] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 17035-17937 bp Ori: QMH70954.1 Feature: domain Description: DUF1281 Location: 17104-17632 bp Feature: domain Description: DUF1 281 Location: 1 71 04-1 7632 bp Feature: domain Description: DUF1281_C Location: 17638-17878 bp Feature: domain Description: DUF1 281 _C Location: 1 7638-1 7878 bp Feature: gene Location: 17934-18245 bp Feature: gene Location: 18474-20174 bp Ori: QMH70868.1 Gene: ltrA Feature: domain Description: RVT_N Location: 18528-18771 bp Feature: domain Description: RVT_N Location: 1 8528-1 8771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18816-19452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 881 6-1 9452 bp Feature: domain Description: GIIM Note: maturase Location: 19503-19737 bp Feature: domain Description: GIIM Note: maturase Location: 1 9503-1 9737 bp Feature: domain Description: HNHc Note: nucleases Location: 19968-20118 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9968-201 1 8 bp Feature: gene Location: 20754-21407 bp Ori: QMH70869.1 Feature: domain Description: PRK13699 Location: 20799-21405 bp Feature: domain Description: PRK1 3699 Location: 20799-21 405 bp Feature: gene Location: 21408-21629 bp Feature: gene Location: 24202-24393 bp Feature: gene Location: 24465-24779 bp Feature: gene Location: 25816-27717 bp Ori: QMH70875.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26083-26914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26083-2691 4 bp Feature: domain Description: Intron_maturas2 Location: 27028-27286 bp Feature: domain Description: Intron_maturas2 Location: 27028-27286 bp Feature: domain Description: HNHc Note: nucleases Location: 27460-27622 bp Feature: domain Description: HNHc Note: nucleases Location: 27460-27622 bp Feature: gene Location: 27867-28352 bp Ori: QMH70956.1 Gene: ssb Feature: domain Description: PRK13732 Location: 27870-28350 bp Feature: domain Description: PRK1 3732 Location: 27870-28350 bp Feature: gene Location: 28409-28642 bp Ori: QMH70957.1 Feature: domain Description: DUF905 Location: 28439-28640 bp Feature: domain Description: DUF905 Location: 28439-28640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP057463.1 Escherichia fergusonii strain RHB26-C03 chromosome, complete genome (4622703 bp)
Overview 1 RT 1: 2945493-2949373 bp Neighborhood of RT #1 [2945493, 2949378] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 2945493-2946209 bp Ori: QMH69179.1 Gene: rph Feature: domain Description: rph Location: 2945496-2946204 bp Feature: domain Description: rph Location: 2 945496-2 9462 04 bp Feature: gene Location: 2946275-2946916 bp Ori: QMH69180.1 Gene: pyrE Feature: domain Description: pyrE Location: 2946278-2946911 bp Feature: domain Description: pyrE Location: 2 9462 78-2 946911 bp Feature: gene Location: 2947214-2948173 bp Ori: QMH69181.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2947349-2947898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 947349-2 947898 bp Feature: gene Location: 2948217-2948813 bp Ori: QMH69182.1 Gene: slmA Feature: domain Description: slmA Location: 2948223-2948799 bp Feature: domain Description: slmA Location: 2 9482 2 3-2 948799 bp Feature: gene Location: 2948920-2949378 bp Ori: QMH69183.1 Gene: dut Feature: domain Description: dut Location: 2948926-2949373 bp Feature: domain Description: dut Location: 2 94892 6-2 949373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)