myRT

myRT report for GCA_013874375.1_ASM1387437v1

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Seq: CP059408.1 Bacteroides sp. CACC 737 chromosome, complete genome (4470359 bp)
Overview 1 RT 1: 1538735-1545174 bp 2 RT 2: 2256301-2260733 bp Neighborhood of RT #1 [1538735, 1545701] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3378 Neighborhood of RT #2 [2256301, 2260733] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 1538735-1539711 bp Feature: gene Location: 1540011-1541177 bp Ori: QMI81533.1 Feature: domain Description: Arm-DNA-bind_5 Location: 1540047-1540296 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 540047-1 540296 bp Feature: domain Description: Phage_int_SAM_5 Location: 1540335-1540641 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 540335-1 540641 bp Feature: domain Description: INTN1_C_like Location: 1540692-1541160 bp Feature: domain Description: INTN1 _C_like Location: 1 540692-1 541 1 60 bp Feature: gene Location: 1541728-1543536 bp Ori: QMI81534.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1541992-1542814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 541 992-1 54281 4 bp Feature: domain Description: Intron_maturas2 Location: 1542940-1543195 bp Feature: domain Description: Intron_maturas2 Location: 1 542940-1 5431 95 bp Feature: gene Location: 1543760-1544149 bp Feature: gene Location: 1544460-1545701 bp Ori: QMI81536.1 Feature: domain Description: COG3378 Location: 1544874-1545174 bp Feature: domain Description: COG3378 Location: 1 544874-1 5451 74 bp Feature: gene Location: 2256301-2257314 bp Ori: QMI78812.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 2256322-2257285 bp Feature: domain Description: Bac_Flav_CT_J Location: 2256322-2257285 bp Feature: gene Location: 2257342-2257878 bp Feature: gene Location: 2257871-2259676 bp Ori: QMI78814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2258135-2258957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22581 35-2258957 bp Feature: domain Description: Intron_maturas2 Location: 2259116-2259485 bp Feature: domain Description: Intron_maturas2 Location: 22591 1 6-2259485 bp Feature: domain Description: HNHc Note: nucleases Location: 2259509-2259650 bp Feature: domain Description: HNHc Note: nucleases Location: 2259509-2259650 bp Feature: gene Location: 2260227-2260454 bp Ori: QMI78815.1 Feature: domain Description: DUF4141 Location: 2260242-2260395 bp Feature: domain Description: DUF41 41 Location: 2260242-2260395 bp Feature: gene Location: 2260458-2260733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3378 (Phage- or plasmid-associated DNA primase ), Bac_Flav_CT_J (TIGR03782), HNHc (smart00507), DUF4141 (pfam13605)