myRT

myRT report for GCA_014068615.1_ASM1406861v1

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Seq: CP059677.1 Clostridium botulinum strain CJ0611A1 chromosome, complete genome (3912363 bp)
Overview 1 RT 1: 1834949-1838972 bp 2 RT 2: 2496197-2502312 bp 3 RT 3: 2508508-2514357 bp Neighborhood of RT #1 [1834949, 1838998] OmpR HD_3 RVT_N RVT-GII GIIM HNHc YmaF Neighborhood of RT #2 [2496197, 2502323] tgl RVT_N RVT-GII GIIM HNHc YktD DUF3862 Neighborhood of RT #3 [2508508, 2514521] GIY-YIG_LuxR_like RVT_N RVT-GII GIIM PcnB YcgL Feature: gene Location: 1834949-1835089 bp Ori: QMU02077.1 Feature: domain Description: OmpR Location: 1834955-1835078 bp Feature: domain Description: OmpR Location: 1 834955-1 835078 bp Feature: gene Location: 1835182-1835742 bp Ori: QMU02078.1 Feature: domain Description: HD_3 Location: 1835221-1835695 bp Feature: domain Description: HD_3 Location: 1 835221 -1 835695 bp Feature: gene Location: 1836296-1838122 bp Ori: QMU02079.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1836353-1836590 bp Feature: domain Description: RVT_N Location: 1 836353-1 836590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836653-1837307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 836653-1 837307 bp Feature: domain Description: GIIM Note: maturase Location: 1837370-1837604 bp Feature: domain Description: GIIM Note: maturase Location: 1 837370-1 837604 bp Feature: domain Description: HNHc Note: nucleases Location: 1837811-1837976 bp Feature: domain Description: HNHc Note: nucleases Location: 1 83781 1 -1 837976 bp Feature: gene Location: 1838263-1838478 bp Feature: gene Location: 1838660-1838998 bp Ori: QMU02080.1 Feature: domain Description: YmaF Location: 1838690-1838972 bp Feature: domain Description: YmaF Location: 1 838690-1 838972 bp Feature: gene Location: 2496197-2497018 bp Ori: QMT99294.1 Feature: domain Description: tgl Location: 2496200-2497010 bp Feature: domain Description: tgl Location: 2496200-249701 0 bp Feature: gene Location: 2497015-2498010 bp Feature: gene Location: 2498701-2500527 bp Ori: QMT99296.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2498758-2498995 bp Feature: domain Description: RVT_N Location: 2498758-2498995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499058-2499712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499058-249971 2 bp Feature: domain Description: GIIM Note: maturase Location: 2499775-2500009 bp Feature: domain Description: GIIM Note: maturase Location: 2499775-2500009 bp Feature: domain Description: HNHc Note: nucleases Location: 2500216-2500381 bp Feature: domain Description: HNHc Note: nucleases Location: 250021 6-2500381 bp Feature: gene Location: 2501232-2501822 bp Ori: QMU02251.1 Feature: domain Description: YktD Location: 2501253-2501682 bp Feature: domain Description: YktD Location: 2501 253-2501 682 bp Feature: gene Location: 2501853-2502323 bp Feature: domain Description: DUF3862 Location: 2502033-2502312 bp Feature: domain Description: DUF3862 Location: 2502033-250231 2 bp Feature: gene Location: 2508508-2508867 bp Ori: QMT99302.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 2508529-2508823 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 2508529-2508823 bp Feature: gene Location: 2508938-2509420 bp Feature: gene Location: 2509716-2511536 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2509773-2509872 bp Feature: domain Description: RVT_N Location: 2509773-2509872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2510271-2510724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 0271 -251 0724 bp Feature: domain Description: GIIM Note: maturase Location: 2510787-2511021 bp Feature: domain Description: GIIM Note: maturase Location: 251 0787-251 1 021 bp Feature: gene Location: 2512169-2513521 bp Ori: QMT99304.1 Feature: domain Description: PcnB Location: 2512208-2513471 bp Feature: domain Description: PcnB Location: 251 2208-251 3471 bp Feature: gene Location: 2513511-2514521 bp Feature: domain Description: YcgL Location: 2513574-2514357 bp Feature: domain Description: YcgL Location: 251 3574-251 4357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), HD_3 (pfam13023), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YmaF (pfam12788), tgl (PRK03187), YktD (COG3315), DUF3862 (pfam12978)
GIY-YIG_LuxR_like (cd10451), PcnB (COG0617), YcgL (pfam05166)