myRT

myRT report for GCA_014083925.1_ASM1408392v1

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Seq: CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence (3817659 bp)
Overview 1 RT 1: 3131373-3136704 bp 2 RT 2: 3719967-3726630 bp Neighborhood of RT #1 [3131373, 3136712] HTH_HMRTR_unk RVT_N RVT-GII GIIM TnsE_C InsE Neighborhood of RT #2 [3719967, 3726630] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III DUF1874 Feature: gene Location: 3131373-3131807 bp Ori: QMV15508.1 Gene: merR Feature: domain Description: HTH_HMRTR_unk Location: 3131382-3131769 bp Feature: domain Description: HTH_HMRTR_unk Location: 31 31 382-31 31 769 bp Feature: gene Location: 3131861-3131974 bp Feature: gene Location: 3132711-3134183 bp Ori: QMV15510.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 3132759-3133002 bp Feature: domain Description: RVT_N Location: 31 32759-31 33002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3133047-3133674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 33047-31 33674 bp Feature: domain Description: GIIM Note: maturase Location: 3133734-3133959 bp Feature: domain Description: GIIM Note: maturase Location: 31 33734-31 33959 bp Feature: gene Location: 3134346-3135974 bp Ori: QMV15511.1 Feature: domain Description: TnsE_C Location: 3135522-3135960 bp Feature: domain Description: TnsE_C Location: 31 35522-31 35960 bp Feature: gene Location: 3136425-3136712 bp Ori: QMV15512.1 Feature: domain Description: InsE Location: 3136428-3136704 bp Feature: domain Description: InsE Location: 31 36428-31 36704 bp Feature: gene Location: 3719967-3720356 bp Feature: gene Location: 3721145-3721438 bp Ori: QMV15983.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 3721169-3721397 bp Feature: domain Description: Cas2_I_II_III Location: 3721 1 69-3721 397 bp Feature: gene Location: 3721423-3724389 bp Ori: QMV15984.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3722506-3723100 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3722506-37231 00 bp Feature: domain Description: Cas1_I-II-III Location: 3723439-3724354 bp Feature: domain Description: Cas1 _I-II-III Location: 3723439-3724354 bp Feature: gene Location: 3724488-3724814 bp Ori: QMV15985.1 Feature: domain Description: DUF1874 Location: 3724497-3724770 bp Feature: domain Description: DUF1 874 Location: 3724497-3724770 bp Feature: gene Location: 3724807-3726630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_HMRTR_unk (cd04787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnsE_C (pfam18623), InsE (COG2963), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF1874 (pfam08960)

Seq: CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence (1192351 bp)
Overview 1 RT 1: 158059-170368 bp Neighborhood of RT #1 [158059, 170568] DUF5051 CRISPR_Cas6 RVT-CRISPR Cas_Cas1 TIGR03986 Csm3_III-A Csm3_III-A Csm3_III-A Csm3_III-A Feature: gene Location: 158059-160905 bp Feature: gene Location: 161595-162146 bp Ori: QMV16209.1 Feature: domain Description: DUF5051 Location: 161598-162123 bp Feature: domain Description: DUF5051 Location: 161598-162 12 3 bp Feature: gene Location: 163789-166620 bp Ori: QMV16210.1 Gene: cas4-cas1 Feature: domain Description: CRISPR_Cas6 Location: 164284-164668 bp Feature: domain Description: CRISPR_Cas6 Location: 1642 84-164668 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 164890-165493 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 164890-165493 bp Feature: domain Description: Cas_Cas1 Location: 165673-166492 bp Feature: domain Description: Cas_Cas1 Location: 165673-166492 bp Feature: gene Location: 166635-169010 bp Ori: QMV16211.1 Feature: domain Description: TIGR03986 Location: 166659-168573 bp Feature: domain Description: TIGR03986 Location: 166659-168573 bp Feature: gene Location: 169012-170568 bp Ori: QMV16212.1 Feature: domain Description: Csm3_III-A Location: 169033-169207 bp Feature: domain Description: Csm3_III-A Location: 169033-1692 07 bp Feature: domain Description: Csm3_III-A Location: 169351-169636 bp Feature: domain Description: Csm3_III-A Location: 169351-169636 bp Feature: domain Description: Csm3_III-A Location: 169891-170014 bp Feature: domain Description: Csm3_III-A Location: 169891-170014 bp Feature: domain Description: Csm3_III-A Location: 170044-170368 bp Feature: domain Description: Csm3_III-A Location: 170044-170368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5051 (pfam16473), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR03986 (CRISPR-associated protein), Csm3_III-A (cd09684)