myRT

myRT report for GCA_014163475.1_ASM1416347v1

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Seq: AP022638.1 Bradyrhizobium diazoefficiens F07S3 DNA, complete genome (9432644 bp)
Overview 1 RT 1: 198121-205054 bp 2 RT 2: 1866792-1872928 bp 3 RT 3: 2043987-2054588 bp 4 RT 4: 2128447-2134547 bp 5 RT 5: 2305606-2316207 bp 6 RT 6: 2390034-2394587 bp 7 RT 7: 2437820-2445312 bp 8 RT 8: 2527783-2532695 bp 9 RT 9: 9318577-9323756 bp 10 RT 10: 9327485-9332559 bp 11 RT 11: 9420906-9427853 bp Neighborhood of RT #1 [198121, 205143] UDG RVT-UG12 PRK12904 SurA_N_3 SurA Neighborhood of RT #2 [1866792, 1872993] COG3293 RVT-GII DDE_5 DUF1521 DUF1521 Neighborhood of RT #3 [2043987, 2054677] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII CpaD Neighborhood of RT #4 [2128447, 2134612] RVT-GII DDE_5 DUF1521 DUF1521 Neighborhood of RT #5 [2305606, 2316296] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom RVT-GII CpaD Neighborhood of RT #6 [2390034, 2394587] COG3293 RVT-GII Neighborhood of RT #7 [2437820, 2445312] LptD RVT-GII GIIM PRK06215 Neighborhood of RT #8 [2527783, 2532817] RVT-GII GIIM HTH_Tnp_1 Tra5 Neighborhood of RT #9 [9318577, 9323818] INT_RitB_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #10 [9327485, 9332600] RVT-GII RVT-GII RVT-GII MmsB Neighborhood of RT #11 [9420906, 9427954] HU_IHF DUF772 DDE_Tnp_1 DDE_Tnp_1 RVT-GII GIIM rve rve Feature: gene Location: 198121-198816 bp Ori: BBZ90362.1 Feature: domain Description: UDG Location: 198388-198727 bp Feature: domain Description: UDG Location: 1 98388-1 98727 bp Feature: gene Location: 198866-199066 bp Feature: gene Location: 199581-200633 bp Ori: BBZ90364.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 199962-200418 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 99962-20041 8 bp Feature: gene Location: 201026-203866 bp Ori: BBZ90365.1 Gene: secA Feature: domain Description: PRK12904 Location: 201038-203858 bp Feature: domain Description: PRK1 2904 Location: 201 038-203858 bp Feature: gene Location: 204220-205143 bp Ori: BBZ90366.1 Feature: domain Description: SurA_N_3 Location: 204268-204517 bp Feature: domain Description: SurA_N_3 Location: 204268-20451 7 bp Feature: domain Description: SurA Location: 204541-205054 bp Feature: domain Description: SurA Location: 204541 -205054 bp Feature: gene Location: 1866792-1867244 bp Ori: BBZ91900.1 Feature: domain Description: COG3293 Location: 1866861-1867227 bp Feature: domain Description: COG3293 Location: 1 866861 -1 867227 bp Feature: gene Location: 1867269-1867625 bp Feature: gene Location: 1867632-1869107 bp Ori: BBZ91902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868040-1868730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868040-1 868730 bp Feature: gene Location: 1869206-1870519 bp Ori: BBZ91903.1 Feature: domain Description: DDE_5 Location: 1869248-1870040 bp Feature: domain Description: DDE_5 Location: 1 869248-1 870040 bp Feature: gene Location: 1871455-1872993 bp Ori: BBZ91904.1 Feature: domain Description: DUF1521 Location: 1871791-1872292 bp Feature: domain Description: DUF1 521 Location: 1 871 791 -1 872292 bp Feature: domain Description: DUF1521 Location: 1872427-1872928 bp Feature: domain Description: DUF1 521 Location: 1 872427-1 872928 bp Feature: gene Location: 2043987-2045345 bp Ori: BBZ92074.1 Feature: domain Description: COG4584 Location: 2044062-2044863 bp Feature: domain Description: COG4584 Location: 2044062-2044863 bp Feature: domain Description: COG4584 Location: 2044893-2045337 bp Feature: domain Description: COG4584 Location: 2044893-2045337 bp Feature: gene Location: 2045351-2046082 bp Ori: BBZ92075.1 Feature: domain Description: IstB_IS21_ATP Location: 2045372-2045456 bp Feature: domain Description: IstB_IS21 _ATP Location: 2045372-2045456 bp Feature: domain Description: IstB_IS21 Location: 2045462-2045909 bp Feature: domain Description: IstB_IS21 Location: 2045462-2045909 bp Feature: gene Location: 2047593-2048315 bp Ori: BBZ92076.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047920-2048313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047920-204831 3 bp Feature: gene Location: 2048488-2048742 bp Ori: BBZ92077.1 Feature: domain Description: PHA00617 Location: 2048539-2048725 bp Feature: domain Description: PHA0061 7 Location: 2048539-2048725 bp Feature: gene Location: 2048883-2050745 bp Ori: BBZ92078.1 Feature: domain Description: Resolvase Location: 2048895-2049336 bp Feature: domain Description: Resolvase Location: 2048895-2049336 bp Feature: domain Description: Recombinase Location: 2049423-2049783 bp Feature: domain Description: Recombinase Location: 2049423-2049783 bp Feature: domain Description: Zn_ribbon_recom Location: 2049825-2050011 bp Feature: domain Description: Zn_ribbon_recom Location: 2049825-205001 1 bp Feature: gene Location: 2050630-2051211 bp Ori: BBZ92079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2050636-2050846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2050636-2050846 bp Feature: gene Location: 2051504-2053819 bp Feature: gene Location: 2054015-2054677 bp Ori: BBZ92081.1 Feature: domain Description: CpaD Location: 2054048-2054588 bp Feature: domain Description: CpaD Location: 2054048-2054588 bp Feature: gene Location: 2128447-2128830 bp Feature: gene Location: 2128888-2129244 bp Feature: gene Location: 2129251-2130726 bp Ori: BBZ92137.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2129659-2130349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 29659-21 30349 bp Feature: gene Location: 2130825-2132138 bp Ori: BBZ92138.1 Feature: domain Description: DDE_5 Location: 2130867-2131659 bp Feature: domain Description: DDE_5 Location: 21 30867-21 31 659 bp Feature: gene Location: 2133074-2134612 bp Ori: BBZ92139.1 Feature: domain Description: DUF1521 Location: 2133410-2133911 bp Feature: domain Description: DUF1 521 Location: 21 3341 0-21 3391 1 bp Feature: domain Description: DUF1521 Location: 2134046-2134547 bp Feature: domain Description: DUF1 521 Location: 21 34046-21 34547 bp Feature: gene Location: 2305606-2306964 bp Ori: BBZ92312.1 Feature: domain Description: COG4584 Location: 2305681-2306482 bp Feature: domain Description: COG4584 Location: 2305681 -2306482 bp Feature: domain Description: COG4584 Location: 2306512-2306956 bp Feature: domain Description: COG4584 Location: 230651 2-2306956 bp Feature: gene Location: 2306970-2307701 bp Ori: BBZ92313.1 Feature: domain Description: IstB_IS21_ATP Location: 2306991-2307075 bp Feature: domain Description: IstB_IS21 _ATP Location: 2306991 -2307075 bp Feature: domain Description: IstB_IS21 Location: 2307081-2307528 bp Feature: domain Description: IstB_IS21 Location: 2307081 -2307528 bp Feature: gene Location: 2309212-2309934 bp Ori: BBZ92314.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2309539-2309932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2309539-2309932 bp Feature: gene Location: 2310107-2310361 bp Ori: BBZ92315.1 Feature: domain Description: PHA00617 Location: 2310158-2310344 bp Feature: domain Description: PHA0061 7 Location: 231 01 58-231 0344 bp Feature: gene Location: 2310502-2312364 bp Ori: BBZ92316.1 Feature: domain Description: Resolvase Location: 2310514-2310955 bp Feature: domain Description: Resolvase Location: 231 051 4-231 0955 bp Feature: domain Description: Recombinase Location: 2311042-2311402 bp Feature: domain Description: Recombinase Location: 231 1 042-231 1 402 bp Feature: domain Description: Zn_ribbon_recom Location: 2311444-2311630 bp Feature: domain Description: Zn_ribbon_recom Location: 231 1 444-231 1 630 bp Feature: gene Location: 2312249-2312830 bp Ori: BBZ92317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2312255-2312465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 2255-231 2465 bp Feature: gene Location: 2313123-2315438 bp Feature: gene Location: 2315634-2316296 bp Ori: BBZ92319.1 Feature: domain Description: CpaD Location: 2315667-2316207 bp Feature: domain Description: CpaD Location: 231 5667-231 6207 bp Feature: gene Location: 2390034-2390486 bp Ori: BBZ92373.1 Feature: domain Description: COG3293 Location: 2390103-2390469 bp Feature: domain Description: COG3293 Location: 23901 03-2390469 bp Feature: gene Location: 2390511-2390867 bp Feature: gene Location: 2390874-2392349 bp Ori: BBZ92375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2391282-2391972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2391 282-2391 972 bp Feature: gene Location: 2393265-2393600 bp Feature: gene Location: 2393727-2394587 bp Feature: gene Location: 2437820-2440273 bp Ori: BBZ92416.1 Gene: lptD_1 Feature: domain Description: LptD Location: 2438000-2440196 bp Feature: domain Description: LptD Location: 2438000-24401 96 bp Feature: gene Location: 2440291-2440482 bp Feature: gene Location: 2441074-2442303 bp Ori: BBZ92418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441275-2441932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441 275-2441 932 bp Feature: domain Description: GIIM Note: maturase Location: 2442007-2442211 bp Feature: domain Description: GIIM Note: maturase Location: 2442007-244221 1 bp Feature: gene Location: 2443170-2443907 bp Ori: BBZ92419.1 Feature: domain Description: PRK06215 Location: 2443179-2443902 bp Feature: domain Description: PRK0621 5 Location: 24431 79-2443902 bp Feature: gene Location: 2445052-2445312 bp Feature: gene Location: 2527783-2528082 bp Feature: gene Location: 2528550-2528783 bp Feature: gene Location: 2530292-2531536 bp Ori: BBZ92480.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2530493-2531147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2530493-2531 1 47 bp Feature: domain Description: GIIM Note: maturase Location: 2531228-2531456 bp Feature: domain Description: GIIM Note: maturase Location: 2531 228-2531 456 bp Feature: gene Location: 2531713-2531967 bp Ori: BBZ92481.1 Feature: domain Description: HTH_Tnp_1 Location: 2531719-2531926 bp Feature: domain Description: HTH_Tnp_1 Location: 2531 71 9-2531 926 bp Feature: gene Location: 2531930-2532817 bp Ori: BBZ92482.1 Feature: domain Description: Tra5 Location: 2531951-2532695 bp Feature: domain Description: Tra5 Location: 2531 951 -2532695 bp Feature: gene Location: 9318577-9319137 bp Ori: BBZ98973.1 Feature: domain Description: INT_RitB_C_like Location: 9318580-9319057 bp Feature: domain Description: INT_RitB_C_like Location: 931 8580-931 9057 bp Feature: gene Location: 9319644-9320369 bp Ori: BBZ98974.1 Feature: domain Description: DDE_Tnp_IS66 Location: 9319662-9320097 bp Feature: domain Description: DDE_Tnp_IS66 Location: 931 9662-9320097 bp Feature: gene Location: 9320606-9321934 bp Ori: BBZ98975.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9320897-9321560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9320897-9321 560 bp Feature: domain Description: GIIM Note: maturase Location: 9321626-9321848 bp Feature: domain Description: GIIM Note: maturase Location: 9321 626-9321 848 bp Feature: gene Location: 9321870-9322706 bp Ori: BBZ98976.1 Feature: domain Description: LomR Location: 9321906-9322617 bp Feature: domain Description: LomR Location: 9321 906-932261 7 bp Feature: gene Location: 9323150-9323818 bp Ori: BBZ98977.1 Feature: domain Description: PHA02518 Location: 9323159-9323756 bp Feature: domain Description: PHA0251 8 Location: 93231 59-9323756 bp Feature: gene Location: 9327485-9328024 bp Feature: gene Location: 9328997-9329263 bp Feature: gene Location: 9330630-9331217 bp Ori: BBZ98983.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9330633-9330840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9330633-9330840 bp Feature: gene Location: 9331110-9331310 bp Feature: gene Location: 9331349-9331621 bp Ori: BBZ98985.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9331352-9331610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9331 352-9331 61 0 bp Feature: gene Location: 9331548-9332108 bp Ori: BBZ98986.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9331956-9332034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9331 956-9332034 bp Feature: gene Location: 9332343-9332480 bp Feature: gene Location: 9332445-9332600 bp Ori: BBZ98988.1 Feature: domain Description: MmsB Location: 9332448-9332559 bp Feature: domain Description: MmsB Location: 9332448-9332559 bp Feature: gene Location: 9420906-9421184 bp Ori: BBZ99085.1 Gene: hupT Feature: domain Description: HU_IHF Location: 9420921-9421170 bp Feature: domain Description: HU_IHF Location: 9420921 -9421 1 70 bp Feature: gene Location: 9421422-9422768 bp Ori: BBZ99086.1 Feature: domain Description: DUF772 Location: 9421581-9421797 bp Feature: domain Description: DUF772 Location: 9421 581 -9421 797 bp Feature: domain Description: DDE_Tnp_1 Location: 9422250-9422469 bp Feature: domain Description: DDE_Tnp_1 Location: 9422250-9422469 bp Feature: domain Description: DDE_Tnp_1 Location: 9422541-9422658 bp Feature: domain Description: DDE_Tnp_1 Location: 9422541 -9422658 bp Feature: gene Location: 9422937-9424361 bp Ori: BBZ99087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9423129-9423747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94231 29-9423747 bp Feature: domain Description: GIIM Note: maturase Location: 9423798-9423996 bp Feature: domain Description: GIIM Note: maturase Location: 9423798-9423996 bp Feature: gene Location: 9425789-9427021 bp Ori: BBZ99088.1 Feature: domain Description: rve Location: 9426017-9426338 bp Feature: domain Description: rve Location: 942601 7-9426338 bp Feature: gene Location: 9427652-9427954 bp Ori: BBZ99089.1 Feature: domain Description: rve Location: 9427655-9427853 bp Feature: domain Description: rve Location: 9427655-9427853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UDG (smart00986), RVT-UG12, PRK12904 (preprotein translocase subunit SecA; Reviewed), SurA_N_3 (pfam13624), SurA (COG0760), COG3293 (Transposase ), RVT-GII, DDE_5 (pfam13546), DUF1521 (pfam07481), COG4584 (Transposase )
IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), CpaD (COG5461), LptD (COG1452), GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional)
HTH_Tnp_1 (pfam01527), Tra5 (COG2801), INT_RitB_C_like (cd00797), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), MmsB (COG2084), HU_IHF (cl00257), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609)
rve (pfam00665)