myRT

myRT report for GCA_014168755.1_ASM1416875v1

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Seq: AP021946.1 Escherichia coli DNA, complete genome, strain: WP2-S18-ESBL-08 (5130684 bp)
Overview 1 RT 1: 688475-694337 bp 2 RT 2: 728641-737662 bp 3 RT 3: 2116999-2120800 bp 4 RT 4: 4184264-4189297 bp 5 RT 5: 4371000-4376079 bp 6 RT 6: 4544982-4548934 bp 7 RT 7: 4576937-4583013 bp Neighborhood of RT #1 [688475, 694351] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [728641, 738057] InsE PHA02517 RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #3 [2116999, 2120811] Ogr_Delta PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4184264, 4192629] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP phage_tail_N Neighborhood of RT #5 [4371000, 4376153] fecE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [4544982, 4549047] InsE PHA02517 RVT-GII GIIM PHA02517 EptA_B_N Neighborhood of RT #7 [4576937, 4583072] HTH_28 RVT-GII group_II_RT_mat RocR PHA02517 Feature: gene Location: 688475-689731 bp Ori: BBQ60665.1 Feature: domain Description: PRK13381 Location: 688481-689696 bp Feature: domain Description: PRK1 3381 Location: 688481 -689696 bp Feature: gene Location: 689728-691089 bp Ori: BBQ60666.1 Feature: domain Description: DcuC Location: 689731-691063 bp Feature: domain Description: DcuC Location: 689731 -691 063 bp Feature: gene Location: 691735-692181 bp Ori: BBQ60667.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692041-692143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692041 -6921 43 bp Feature: gene Location: 692704-693735 bp Ori: BBQ60668.1 Gene: ansA Feature: domain Description: Asparaginase_2 Location: 692794-693727 bp Feature: domain Description: Asparaginase_2 Location: 692794-693727 bp Feature: gene Location: 694073-694351 bp Ori: BBQ60669.1 Feature: domain Description: DUF5339 Location: 694136-694337 bp Feature: domain Description: DUF5339 Location: 6941 36-694337 bp Feature: gene Location: 728641-728967 bp Ori: BBQ60703.1 Feature: domain Description: InsE Location: 728644-728965 bp Feature: domain Description: InsE Location: 728644-728965 bp Feature: gene Location: 728967-729446 bp Ori: BBQ60704.1 Feature: domain Description: PHA02517 Location: 729027-729381 bp Feature: domain Description: PHA0251 7 Location: 729027-729381 bp Feature: gene Location: 730216-731562 bp Ori: BBQ60705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730312-731044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73031 2-731 044 bp Feature: domain Description: GIIM Note: maturase Location: 731119-731317 bp Feature: domain Description: GIIM Note: maturase Location: 731 1 1 9-731 31 7 bp Feature: gene Location: 731727-732101 bp Ori: BBQ60706.1 Feature: domain Description: PHA02517 Location: 731748-732093 bp Feature: domain Description: PHA0251 7 Location: 731 748-732093 bp Feature: gene Location: 732322-738057 bp Ori: BBQ60707.1 Feature: domain Description: DUF4011 Location: 732412-733246 bp Feature: domain Description: DUF401 1 Location: 73241 2-733246 bp Feature: domain Description: DEXXQc_SF1 Location: 733603-736705 bp Feature: domain Description: DEXXQc_SF1 Location: 733603-736705 bp Feature: domain Description: SF1_C_Upf1 Location: 736714-737242 bp Feature: domain Description: SF1 _C_Upf1 Location: 73671 4-737242 bp Feature: domain Description: MTES_1575 Location: 737371-737662 bp Feature: domain Description: MTES_1 575 Location: 737371 -737662 bp Feature: gene Location: 2116999-2117259 bp Ori: BBQ62013.1 Feature: domain Description: Ogr_Delta Location: 2117008-2117149 bp Feature: domain Description: Ogr_Delta Location: 21 1 7008-21 1 71 49 bp Feature: gene Location: 2117373-2117747 bp Ori: BBQ62014.1 Feature: domain Description: PHA02517 Location: 2117376-2117736 bp Feature: domain Description: PHA0251 7 Location: 21 1 7376-21 1 7736 bp Feature: gene Location: 2117942-2119465 bp Ori: BBQ62015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2118215-2118947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 821 5-21 1 8947 bp Feature: domain Description: GIIM Note: maturase Location: 2119022-2119220 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 9022-21 1 9220 bp Feature: gene Location: 2120057-2120296 bp Ori: BBQ62016.1 Feature: domain Description: PHA02517 Location: 2120060-2120231 bp Feature: domain Description: PHA0251 7 Location: 21 20060-21 20231 bp Feature: gene Location: 2120509-2120811 bp Ori: BBQ62017.1 Feature: domain Description: InsE Location: 2120518-2120800 bp Feature: domain Description: InsE Location: 21 2051 8-21 20800 bp Feature: gene Location: 4184264-4185850 bp Ori: BBQ63984.1 Gene: prfC Feature: domain Description: prfC Location: 4184282-4185848 bp Feature: domain Description: prfC Location: 41 84282-41 85848 bp Feature: gene Location: 4186070-4186330 bp Ori: BBQ63985.1 Feature: domain Description: PRK10597 Location: 4186073-4186313 bp Feature: domain Description: PRK1 0597 Location: 41 86073-41 8631 3 bp Feature: gene Location: 4186664-4188292 bp Ori: BBQ63986.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4186979-4187570 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 86979-41 87570 bp Feature: domain Description: TIR_2 Location: 4187897-4188230 bp Feature: domain Description: TIR_2 Location: 41 87897-41 88230 bp Feature: gene Location: 4188737-4188895 bp Ori: BBQ63987.1 Feature: domain Description: Caudo_TAP Location: 4188752-4188884 bp Feature: domain Description: Caudo_TAP Location: 41 88752-41 88884 bp Feature: gene Location: 4188895-4192629 bp Ori: BBQ63988.1 Feature: domain Description: phage_tail_N Location: 4188898-4189297 bp Feature: domain Description: phage_tail_N Location: 41 88898-41 89297 bp Feature: gene Location: 4371000-4371767 bp Ori: BBQ64166.1 Gene: fecE Feature: domain Description: fecE Location: 4371003-4371765 bp Feature: domain Description: fecE Location: 4371 003-4371 765 bp Feature: gene Location: 4372324-4372581 bp Feature: gene Location: 4373232-4374755 bp Ori: BBQ64168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373505-4374237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373505-4374237 bp Feature: domain Description: GIIM Note: maturase Location: 4374312-4374510 bp Feature: domain Description: GIIM Note: maturase Location: 437431 2-437451 0 bp Feature: gene Location: 4375347-4375586 bp Ori: BBQ64169.1 Feature: domain Description: PHA02517 Location: 4375350-4375521 bp Feature: domain Description: PHA0251 7 Location: 4375350-4375521 bp Feature: gene Location: 4375785-4376153 bp Ori: BBQ64170.1 Gene: insM Feature: domain Description: InsE Location: 4375788-4376079 bp Feature: domain Description: InsE Location: 4375788-4376079 bp Feature: gene Location: 4544982-4545308 bp Ori: BBQ64337.1 Feature: domain Description: InsE Location: 4544985-4545306 bp Feature: domain Description: InsE Location: 4544985-4545306 bp Feature: gene Location: 4545308-4545787 bp Ori: BBQ64338.1 Feature: domain Description: PHA02517 Location: 4545368-4545722 bp Feature: domain Description: PHA0251 7 Location: 4545368-4545722 bp Feature: gene Location: 4546379-4547902 bp Ori: BBQ64339.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4546652-4547384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4546652-4547384 bp Feature: domain Description: GIIM Note: maturase Location: 4547459-4547657 bp Feature: domain Description: GIIM Note: maturase Location: 4547459-4547657 bp Feature: gene Location: 4548094-4548465 bp Ori: BBQ64340.1 Feature: domain Description: PHA02517 Location: 4548097-4548463 bp Feature: domain Description: PHA0251 7 Location: 4548097-4548463 bp Feature: gene Location: 4548505-4549047 bp Ori: BBQ64341.1 Feature: domain Description: EptA_B_N Location: 4548637-4548934 bp Feature: domain Description: EptA_B_N Location: 4548637-4548934 bp Feature: gene Location: 4576937-4577209 bp Ori: BBQ64369.1 Feature: domain Description: HTH_28 Location: 4576985-4577096 bp Feature: domain Description: HTH_28 Location: 4576985-4577096 bp Feature: gene Location: 4577253-4577882 bp Feature: gene Location: 4578194-4579495 bp Ori: BBQ64371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578524-4579142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578524-45791 42 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4579178-4579298 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 45791 78-4579298 bp Feature: gene Location: 4580460-4582400 bp Ori: BBQ64372.1 Feature: domain Description: RocR Location: 4580670-4582383 bp Feature: domain Description: RocR Location: 4580670-4582383 bp Feature: gene Location: 4582827-4583072 bp Ori: BBQ64373.1 Feature: domain Description: PHA02517 Location: 4582830-4583013 bp Feature: domain Description: PHA0251 7 Location: 4582830-458301 3 bp Sorry, your browser 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Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043)
SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), Ogr_Delta (pfam04606), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), fecE (PRK11231)
EptA_B_N, HTH_28 (pfam13518), group_II_RT_mat (TIGR04416), RocR (COG3829)