myRT

myRT report for GCA_014168795.1_ASM1416879v1

Download annotations/find similar RTs

Seq: AP021970.1 Raoultella ornithinolytica plasmid pWP3-W18-ESBL-01_1 DNA, complete genome, strain: WP3-W18-ESBL-01 (253831 bp)
Overview 1 RT 1: 18209-23249 bp Neighborhood of RT #1 [18209, 23251] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 18209-19480 bp Ori: BBQ81168.1 Gene: samB Feature: domain Description: umuC Location: 18212-19475 bp Feature: domain Description: umuC Location: 1 821 2-1 9475 bp Feature: gene Location: 19480-19905 bp Ori: BBQ81169.1 Feature: domain Description: PRK10276 Location: 19483-19891 bp Feature: domain Description: PRK1 0276 Location: 1 9483-1 9891 bp Feature: gene Location: 20307-21842 bp Ori: BBQ81170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20712-21450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071 2-21 450 bp Feature: gene Location: 22076-22306 bp Feature: gene Location: 22826-23251 bp Ori: BBQ81172.1 Feature: domain Description: Antirestrict Location: 22961-23249 bp Feature: domain Description: Antirestrict Location: 22961 -23249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: AP021969.1 Raoultella ornithinolytica DNA, complete genome, strain: WP3-W18-ESBL-01 (5536558 bp)
Overview 1 RT 1: 90585-96559 bp 2 RT 2: 1223423-1228552 bp Neighborhood of RT #1 [90585, 96645] adh_fam_1 RVT-Retrons TIR_2 PRK09678 Neighborhood of RT #2 [1223423, 1228881] YafY YafY YeeP RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 90585-91592 bp Ori: BBQ76119.1 Feature: domain Description: adh_fam_1 Location: 90633-91590 bp Feature: domain Description: adh_fam_1 Location: 90633-91590 bp Feature: gene Location: 91933-92730 bp Feature: gene Location: 93242-94873 bp Ori: BBQ76121.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93557-94154 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93557-94154 bp Feature: domain Description: TIR_2 Location: 94478-94838 bp Feature: domain Description: TIR_2 Location: 94478-94838 bp Feature: gene Location: 95659-96402 bp Feature: gene Location: 96406-96645 bp Ori: BBQ76123.1 Feature: domain Description: PRK09678 Location: 96409-96559 bp Feature: domain Description: PRK09678 Location: 96409-96559 bp Feature: gene Location: 1223423-1224124 bp Ori: BBQ77187.1 Feature: domain Description: YafY Location: 1223441-1223630 bp Feature: domain Description: YafY Location: 12 2 3441-12 2 3630 bp Feature: domain Description: YafY Location: 1223774-1224023 bp Feature: domain Description: YafY Location: 12 2 3774-12 2 402 3 bp Feature: gene Location: 1224337-1225212 bp Ori: BBQ77188.1 Feature: domain Description: YeeP Location: 1224340-1225210 bp Feature: domain Description: YeeP Location: 12 2 4340-12 2 52 10 bp Feature: gene Location: 1225720-1226682 bp Ori: BBQ77189.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1225828-1226425 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 2 582 8-12 2 642 5 bp Feature: gene Location: 1226663-1228255 bp Ori: BBQ77190.1 Feature: domain Description: COG3950 Location: 1226843-1228073 bp Feature: domain Description: COG3950 Location: 12 2 6843-12 2 8073 bp Feature: gene Location: 1228252-1228881 bp Ori: BBQ77191.1 Feature: domain Description: TIGR02646 Location: 1228342-1228552 bp Feature: domain Description: TIGR02 646 Location: 12 2 8342 -12 2 8552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT adh_fam_1 (TIGR02817), RVT-Retrons, TIR_2 (pfam13676), PRK09678 (DNA-binding transcriptional regulator; Provisional), YafY (COG2378), YeeP (COG3596), COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)