myRT

myRT report for GCA_014168855.1_ASM1416885v1

Download annotations/find similar RTs

Seq: AP022003.1 Escherichia coli DNA, complete genome, strain: WP3-W18-ESBL-08 (5235350 bp)
Overview 1 RT 1: 86519-91955 bp 2 RT 2: 105253-109389 bp 3 RT 3: 2010842-2014977 bp 4 RT 4: 4025372-4031481 bp 5 RT 5: 4695080-4700417 bp Neighborhood of RT #1 [86519, 91955] zinc_ribbon_11 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [105253, 109445] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM HTH_ARSR Neighborhood of RT #3 [2010842, 2014979] PRK09413 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4025372, 4031540] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Neighborhood of RT #5 [4695080, 4700425] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 86519-86929 bp Ori: BBQ97795.1 Feature: domain Description: zinc_ribbon_11 Location: 86561-86879 bp Feature: domain Description: zinc_ribbon_1 1 Location: 86561 -86879 bp Feature: gene Location: 87181-87621 bp Ori: BBQ97796.1 Feature: domain Description: PHA02517 Location: 87184-87586 bp Feature: domain Description: PHA0251 7 Location: 871 84-87586 bp Feature: gene Location: 87750-89273 bp Ori: BBQ97797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88023-88755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88023-88755 bp Feature: domain Description: GIIM Note: maturase Location: 88830-89028 bp Feature: domain Description: GIIM Note: maturase Location: 88830-89028 bp Feature: gene Location: 90317-90628 bp Ori: BBQ97798.1 Feature: domain Description: InsE Location: 90320-90611 bp Feature: domain Description: InsE Location: 90320-9061 1 bp Feature: gene Location: 91422-91955 bp Feature: gene Location: 105253-106314 bp Ori: BBQ97814.1 Feature: domain Description: COG4584 Location: 105262-105652 bp Feature: domain Description: COG4584 Location: 1 05262-1 05652 bp Feature: domain Description: COG4584 Location: 105766-106180 bp Feature: domain Description: COG4584 Location: 1 05766-1 061 80 bp Feature: gene Location: 106331-107086 bp Ori: BBQ97815.1 Feature: domain Description: IstB_IS21_ATP Location: 106403-106487 bp Feature: domain Description: IstB_IS21 _ATP Location: 1 06403-1 06487 bp Feature: domain Description: IstB_IS21 Location: 106496-107021 bp Feature: domain Description: IstB_IS21 Location: 1 06496-1 07021 bp Feature: gene Location: 107327-108277 bp Ori: BBQ97816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107336-107900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07336-1 07900 bp Feature: domain Description: GIIM Note: maturase Location: 107978-108203 bp Feature: domain Description: GIIM Note: maturase Location: 1 07978-1 08203 bp Feature: gene Location: 108619-108756 bp Feature: gene Location: 109095-109445 bp Ori: BBQ97818.1 Feature: domain Description: HTH_ARSR Location: 109170-109389 bp Feature: domain Description: HTH_ARSR Location: 1 091 70-1 09389 bp Feature: gene Location: 2010842-2011207 bp Ori: BBQ99580.1 Gene: insC1 Feature: domain Description: PRK09413 Location: 2010845-2011205 bp Feature: domain Description: PRK0941 3 Location: 201 0845-201 1 205 bp Feature: gene Location: 2011496-2011867 bp Ori: BBQ99581.1 Feature: domain Description: PHA02517 Location: 2011499-2011865 bp Feature: domain Description: PHA0251 7 Location: 201 1 499-201 1 865 bp Feature: gene Location: 2012059-2013582 bp Ori: BBQ99582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2012332-2013064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 2332-201 3064 bp Feature: domain Description: GIIM Note: maturase Location: 2013139-2013337 bp Feature: domain Description: GIIM Note: maturase Location: 201 31 39-201 3337 bp Feature: gene Location: 2014174-2014653 bp Ori: BBQ99583.1 Feature: domain Description: PHA02517 Location: 2014234-2014588 bp Feature: domain Description: PHA0251 7 Location: 201 4234-201 4588 bp Feature: gene Location: 2014653-2014979 bp Ori: BBQ99584.1 Feature: domain Description: InsE Location: 2014656-2014977 bp Feature: domain Description: InsE Location: 201 4656-201 4977 bp Feature: gene Location: 4025372-4026292 bp Ori: BBR01493.1 Feature: domain Description: AbiEii Location: 4025414-4026155 bp Feature: domain Description: AbiEii Location: 402541 4-40261 55 bp Feature: gene Location: 4026279-4027061 bp Ori: BBR01494.1 Feature: domain Description: AbiEi_3_N Location: 4026291-4026552 bp Feature: domain Description: AbiEi_3_N Location: 4026291 -4026552 bp Feature: domain Description: AbiEi_3 Location: 4026564-4027020 bp Feature: domain Description: AbiEi_3 Location: 4026564-4027020 bp Feature: gene Location: 4027377-4030586 bp Ori: BBR01495.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4027905-4028394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4027905-4028394 bp Feature: domain Description: nitrilase Location: 4029900-4030497 bp Feature: domain Description: nitrilase Location: 4029900-4030497 bp Feature: gene Location: 4030933-4031403 bp Feature: gene Location: 4031400-4031540 bp Ori: BBR01497.1 Feature: domain Description: SfsB Location: 4031409-4031481 bp Feature: domain Description: SfsB Location: 4031 409-4031 481 bp Feature: gene Location: 4695080-4695997 bp Ori: BBR02114.1 Feature: domain Description: PFLE_PFLC Location: 4695116-4695971 bp Feature: domain Description: PFLE_PFLC Location: 46951 1 6-4695971 bp Feature: gene Location: 4696134-4697039 bp Feature: gene Location: 4697525-4698064 bp Ori: BBR02116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697855-4697933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697855-4697933 bp Feature: gene Location: 4698131-4698613 bp Ori: BBR02117.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4698140-4698380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46981 40-4698380 bp Feature: domain Description: GIIM Note: maturase Location: 4698428-4698608 bp Feature: domain Description: GIIM Note: maturase Location: 4698428-4698608 bp Feature: gene Location: 4698935-4699123 bp Feature: gene Location: 4699196-4700425 bp Ori: BBR02119.1 Feature: domain Description: YesM Location: 4699676-4700417 bp Feature: domain Description: YesM Location: 4699676-470041 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), HTH_ARSR (smart00418), PRK09413 (IS2 repressor TnpA; Reviewed)
AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423), PFLE_PFLC (TIGR02494), YesM (COG2972)

Seq: AP022004.1 Escherichia coli plasmid pWP3-W18-ESBL-08_1 DNA, complete genome, strain: WP3-W18-ESBL-08 (131334 bp)
Overview 1 RT 1: 1683-5619 bp 2 RT 2: 92540-96593 bp 3 RT 3: 116061-122172 bp Neighborhood of RT #1 [1683, 5621] InsE PHA02517 RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #2 [92540, 96595] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [116061, 122192] InsE Tra5 RVT-GII GIIM rve PRK08181 Feature: gene Location: 1683-2009 bp Ori: BBR02586.1 Feature: domain Description: InsE Location: 1686-2007 bp Feature: domain Description: InsE Location: 1686-2 007 bp Feature: gene Location: 2009-2488 bp Ori: BBR02587.1 Feature: domain Description: PHA02517 Location: 2069-2423 bp Feature: domain Description: PHA02 517 Location: 2 069-2 42 3 bp Feature: gene Location: 3080-4603 bp Ori: BBR02588.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353-4085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353-4085 bp Feature: domain Description: GIIM Note: maturase Location: 4163-4358 bp Feature: domain Description: GIIM Note: maturase Location: 4163-4358 bp Feature: gene Location: 4720-5166 bp Ori: BBR02589.1 Feature: domain Description: PHA02517 Location: 4723-5164 bp Feature: domain Description: PHA02 517 Location: 472 3-5164 bp Feature: gene Location: 5256-5621 bp Ori: BBR02590.1 Gene: insC5 Feature: domain Description: PRK09413 Location: 5259-5619 bp Feature: domain Description: PRK09413 Location: 52 59-5619 bp Feature: gene Location: 92540-93109 bp Ori: BBR02689.1 Feature: domain Description: autotrans_barl Location: 92621-93056 bp Feature: domain Description: autotrans_barl Location: 92 62 1-93056 bp Feature: gene Location: 93112-93558 bp Ori: BBR02690.1 Feature: domain Description: PHA02517 Location: 93115-93556 bp Feature: domain Description: PHA02 517 Location: 93115-93556 bp Feature: gene Location: 93675-95198 bp Ori: BBR02691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93948-94680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93948-94680 bp Feature: domain Description: GIIM Note: maturase Location: 94755-94953 bp Feature: domain Description: GIIM Note: maturase Location: 94755-94953 bp Feature: gene Location: 95790-96269 bp Ori: BBR02692.1 Feature: domain Description: PHA02517 Location: 95850-96204 bp Feature: domain Description: PHA02 517 Location: 95850-962 04 bp Feature: gene Location: 96269-96595 bp Ori: BBR02693.1 Feature: domain Description: InsE Location: 96272-96593 bp Feature: domain Description: InsE Location: 962 72 -96593 bp Feature: gene Location: 116061-116360 bp Ori: BBR02718.1 Gene: insE4 Feature: domain Description: InsE Location: 116088-116355 bp Feature: domain Description: InsE Location: 116088-116355 bp Feature: gene Location: 116357-117004 bp Ori: BBR02719.1 Feature: domain Description: Tra5 Location: 116468-116978 bp Feature: domain Description: Tra5 Location: 116468-116978 bp Feature: gene Location: 117324-118847 bp Ori: BBR02720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117597-118329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117597-11832 9 bp Feature: domain Description: GIIM Note: maturase Location: 118407-118602 bp Feature: domain Description: GIIM Note: maturase Location: 118407-118602 bp Feature: gene Location: 119941-121440 bp Ori: BBR02721.1 Feature: domain Description: rve Location: 120313-120706 bp Feature: domain Description: rve Location: 12 0313-12 0706 bp Feature: gene Location: 121437-122192 bp Ori: BBR02722.1 Feature: domain Description: PRK08181 Location: 121461-122172 bp Feature: domain Description: PRK08181 Location: 12 1461-12 2 172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed), autotrans_barl (TIGR01414), Tra5 (COG2801), rve (pfam00665), PRK08181 (transposase; Validated)