myRT

myRT report for GCA_014168895.1_ASM1416889v1

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Seq: AP022014.1 Klebsiella quasipneumoniae DNA, complete genome, strain: WP3-S18-ESBL-03 (5314482 bp)
Overview 1 RT 1: 1828382-1834861 bp 2 RT 2: 2082660-2087229 bp 3 RT 3: 2867627-2872871 bp 4 RT 4: 3199249-3204628 bp 5 RT 5: 3390830-3394161 bp Neighborhood of RT #1 [1828382, 1834875] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [2082660, 2087229] RVT-GII PRK10597 Neighborhood of RT #3 [2867627, 2872885] PRK10276 RVT-GII SGNH_hydrolase_like_2 Neighborhood of RT #4 [3199249, 3204681] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3390830, 3394163] PRK11508 PRK14426 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 1828382-1829806 bp Ori: BBR14454.1 Gene: sbcB Feature: domain Description: SbcB Location: 1828388-1829804 bp Feature: domain Description: SbcB Location: 1 828388-1 829804 bp Feature: gene Location: 1829987-1831150 bp Ori: BBR14455.1 Gene: dacD Feature: domain Description: dacD Location: 1829990-1831145 bp Feature: domain Description: dacD Location: 1 829990-1 831 1 45 bp Feature: gene Location: 1831679-1833163 bp Ori: BBR14456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832081-1832771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832081 -1 832771 bp Feature: gene Location: 1833245-1833718 bp Ori: BBR14457.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1833248-1833707 bp Feature: domain Description: PRK1 001 6 Location: 1 833248-1 833707 bp Feature: gene Location: 1833817-1834875 bp Ori: BBR14458.1 Feature: domain Description: YccC Location: 1833823-1834861 bp Feature: domain Description: YccC Location: 1 833823-1 834861 bp Feature: gene Location: 2082660-2083271 bp Feature: gene Location: 2083271-2083459 bp Feature: gene Location: 2085116-2086600 bp Ori: BBR14702.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2085518-2086208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208551 8-2086208 bp Feature: gene Location: 2086679-2086912 bp Ori: BBR14703.1 Feature: domain Description: PRK10597 Location: 2086682-2086907 bp Feature: domain Description: PRK1 0597 Location: 2086682-2086907 bp Feature: gene Location: 2087062-2087229 bp Feature: gene Location: 2867627-2867944 bp Ori: BBR15483.1 Feature: domain Description: PRK10276 Location: 2867633-2867756 bp Feature: domain Description: PRK1 0276 Location: 2867633-2867756 bp Feature: gene Location: 2867944-2868183 bp Feature: gene Location: 2868261-2869745 bp Ori: BBR15485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2868663-2869353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2868663-2869353 bp Feature: gene Location: 2870160-2870906 bp Feature: gene Location: 2870921-2872885 bp Ori: BBR15487.1 Feature: domain Description: SGNH_hydrolase_like_2 Location: 2872514-2872871 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 287251 4-2872871 bp Feature: gene Location: 3199249-3200514 bp Ori: BBR15810.1 Gene: umuC Feature: domain Description: umuC Location: 3199252-3200512 bp Feature: domain Description: umuC Location: 31 99252-320051 2 bp Feature: gene Location: 3200517-3200936 bp Ori: BBR15811.1 Feature: domain Description: PRK10276 Location: 3200520-3200931 bp Feature: domain Description: PRK1 0276 Location: 3200520-3200931 bp Feature: gene Location: 3201341-3202825 bp Ori: BBR15812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201743-3202433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201 743-3202433 bp Feature: gene Location: 3203116-3203358 bp Ori: BBR15813.1 Gene: msgA Feature: domain Description: DinI Location: 3203167-3203347 bp Feature: domain Description: DinI Location: 32031 67-3203347 bp Feature: gene Location: 3203542-3204681 bp Ori: BBR15814.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3203725-3204628 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3203725-3204628 bp Feature: gene Location: 3390830-3391159 bp Ori: BBR15999.1 Feature: domain Description: PRK11508 Location: 3390833-3391157 bp Feature: domain Description: PRK1 1 508 Location: 3390833-3391 1 57 bp Feature: gene Location: 3391156-3391446 bp Ori: BBR16000.1 Feature: domain Description: PRK14426 Location: 3391177-3391438 bp Feature: domain Description: PRK1 4426 Location: 3391 1 77-3391 438 bp Feature: gene Location: 3391582-3393066 bp Ori: BBR16001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3391984-3392674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3391 984-3392674 bp Feature: gene Location: 3393521-3393859 bp Feature: gene Location: 3393870-3394163 bp Ori: BBR16003.1 Feature: domain Description: DDE_Tnp_IS1 Location: 3393873-3394161 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3393873-33941 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10597 (DNA damage-inducible protein I; Provisional), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), SGNH_hydrolase_like_2 (cd01834), umuC (PRK03609), DinI (pfam06183)
GT9_LPS_heptosyltransferase (cd03789), PRK11508 (sulfurtransferase TusE), PRK14426 (acylphosphatase; Provisional), DDE_Tnp_IS1 (pfam03400)

Seq: AP022017.1 Klebsiella quasipneumoniae plasmid pWP3-S18-ESBL-03_3 DNA, complete genome, strain: WP3-S18-ESBL-03 (113050 bp)
Overview 1 RT 1: 46937-52122 bp Neighborhood of RT #1 [46937, 52124] umuC PRK10276 RVT-GII PRK13699 Feature: gene Location: 46937-48211 bp Ori: BBR18280.1 Gene: samB Feature: domain Description: umuC Location: 46940-48200 bp Feature: domain Description: umuC Location: 46940-482 00 bp Feature: gene Location: 48211-48636 bp Ori: BBR18281.1 Feature: domain Description: PRK10276 Location: 48214-48622 bp Feature: domain Description: PRK102 76 Location: 482 14-4862 2 bp Feature: gene Location: 49037-50521 bp Ori: BBR18282.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49439-50129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49439-5012 9 bp Feature: gene Location: 50755-50985 bp Feature: gene Location: 51423-52124 bp Ori: BBR18284.1 Feature: domain Description: PRK13699 Location: 51426-52122 bp Feature: domain Description: PRK13699 Location: 5142 6-52 12 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PRK13699 (putative methylase; Provisional)

Seq: AP022016.1 Klebsiella quasipneumoniae plasmid pWP3-S18-ESBL-03_2 DNA, complete genome, strain: WP3-S18-ESBL-03 (139507 bp)
Overview 1 RT 1: 7936-13288 bp Neighborhood of RT #1 [7936, 13425] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 7936-9207 bp Ori: BBR18100.1 Feature: domain Description: umuC Location: 7939-9199 bp Feature: domain Description: umuC Location: 793 9-9199 bp Feature: gene Location: 9207-9638 bp Ori: BBR18101.1 Feature: domain Description: PRK10276 Location: 9258-9621 bp Feature: domain Description: PRK10276 Location: 9258-9621 bp Feature: gene Location: 10047-11531 bp Ori: BBR18102.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10449-11139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10449-1113 9 bp Feature: gene Location: 11780-12751 bp Ori: BBR18103.1 Feature: domain Description: StbA Location: 11783-12728 bp Feature: domain Description: StbA Location: 11783 -12728 bp Feature: gene Location: 12754-13425 bp Ori: BBR18104.1 Feature: domain Description: Plasmid_stab_B Location: 12769-12976 bp Feature: domain Description: Plasmid_stab_B Location: 12769-12976 bp Feature: domain Description: Plasmid_stab_B Location: 13081-13288 bp Feature: domain Description: Plasmid_stab_B Location: 13 081-13 288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: AP022015.1 Klebsiella quasipneumoniae plasmid pWP3-S18-ESBL-03_1 DNA, complete genome, strain: WP3-S18-ESBL-03 (346351 bp)
Overview 1 RT 1: 83587-88106 bp 2 RT 2: 131915-136905 bp 3 RT 3: 207601-212747 bp 4 RT 4: 337212-342220 bp Neighborhood of RT #1 [83587, 88106] RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Neighborhood of RT #2 [131915, 136910] Antirestrict RVT-GII PRK10276 umuC Neighborhood of RT #3 [207601, 212797] PRK10276 zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII InsQ Neighborhood of RT #4 [337212, 342220] INT_Cre_C RVT-GII HHA Feature: gene Location: 83587-83880 bp Feature: gene Location: 84094-84369 bp Feature: gene Location: 84545-86029 bp Ori: BBR17821.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84947-85637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 94 7-85637 bp Feature: gene Location: 86437-87657 bp Ori: BBR17822.1 Feature: domain Description: zf-ISL3 Location: 86569-86695 bp Feature: domain Description: zf-ISL3 Location: 86569-86695 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 86713-86860 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 86713-86860 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 86911-87616 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 86911-87616 bp Feature: gene Location: 87909-88106 bp Feature: gene Location: 131915-132340 bp Ori: BBR17867.1 Feature: domain Description: Antirestrict Location: 132050-132338 bp Feature: domain Description: Antirestrict Location: 132050-132338 bp Feature: gene Location: 132861-133091 bp Feature: gene Location: 133325-134809 bp Ori: BBR17869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133727-134417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133727-134 4 17 bp Feature: gene Location: 135214-135639 bp Ori: BBR17870.1 Feature: domain Description: PRK10276 Location: 135217-135625 bp Feature: domain Description: PRK10276 Location: 135217-135625 bp Feature: gene Location: 135639-136910 bp Ori: BBR17871.1 Gene: samB Feature: domain Description: umuC Location: 135642-136905 bp Feature: domain Description: umuC Location: 13564 2-136905 bp Feature: gene Location: 207601-208023 bp Ori: BBR17954.1 Feature: domain Description: PRK10276 Location: 207607-208009 bp Feature: domain Description: PRK10276 Location: 207607-208009 bp Feature: gene Location: 208091-209311 bp Ori: BBR17955.1 Feature: domain Description: zf-ISL3 Location: 208223-208349 bp Feature: domain Description: zf-ISL3 Location: 208223-20834 9 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 208367-208514 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 208367-208514 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 208565-209270 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 208565-209270 bp Feature: gene Location: 209758-211242 bp Ori: BBR17956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210160-210850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210160-210850 bp Feature: gene Location: 211610-212797 bp Ori: BBR17957.1 Feature: domain Description: InsQ Location: 211625-212747 bp Feature: domain Description: InsQ Location: 211625-21274 7 bp Feature: gene Location: 337212-337529 bp Feature: gene Location: 337595-338731 bp Ori: BBR18088.1 Feature: domain Description: INT_Cre_C Location: 338018-338672 bp Feature: domain Description: INT_Cre_C Location: 338018-338672 bp Feature: gene Location: 338817-340301 bp Ori: BBR18089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339219-339909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339219-339909 bp Feature: gene Location: 340818-341072 bp Ori: BBR18090.1 Feature: domain Description: HHA Location: 340869-341052 bp Feature: domain Description: HHA Location: 34 0869-34 1052 bp Feature: gene Location: 341159-342220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), Antirestrict (pfam03230), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), InsQ (COG0675), INT_Cre_C (cd00799), HHA (pfam05321)