myRT

myRT report for GCA_014169015.1_ASM1416901v1

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Seq: AP022045.1 Escherichia coli plasmid pWP4-S17-ESBL-03_1 DNA, complete genome, strain: WP4-S17-ESBL-03 (148598 bp)
Overview 1 RT 1: 1792-6481 bp 2 RT 2: 11241-16419 bp 3 RT 3: 88909-91590 bp 4 RT 4: 101948-105735 bp 5 RT 5: 144703-146872 bp Neighborhood of RT #1 [1792, 6486] AdoMet_MTases RVT-GII GIIM HNHc PRK13732 DUF905 Neighborhood of RT #2 [11241, 16454] RVT-GII GIIM HNHc RVT_N RVT-GII DUF932 Neighborhood of RT #3 [88909, 91592] PRK10173 PRK10173 RVT-GII PHA02517 InsE Neighborhood of RT #4 [101948, 105773] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #5 [144703, 146907] DUF1380 RVT-GII GIIM HNHc Feature: gene Location: 1792-2355 bp Ori: BBR46673.1 Feature: domain Description: AdoMet_MTases Location: 1954-2254 bp Feature: domain Description: AdoMet_MTases Location: 1 954-2254 bp Feature: gene Location: 2381-2665 bp Feature: gene Location: 2780-4054 bp Ori: BBR46675.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2783-3365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2783-3365 bp Feature: domain Description: GIIM Note: maturase Location: 3416-3650 bp Feature: domain Description: GIIM Note: maturase Location: 341 6-3650 bp Feature: domain Description: HNHc Note: nucleases Location: 3860-4019 bp Feature: domain Description: HNHc Note: nucleases Location: 3860-401 9 bp Feature: gene Location: 5651-6190 bp Ori: BBR46676.1 Feature: domain Description: PRK13732 Location: 5654-6188 bp Feature: domain Description: PRK1 3732 Location: 5654-61 88 bp Feature: gene Location: 6253-6486 bp Ori: BBR46677.1 Feature: domain Description: DUF905 Location: 6283-6481 bp Feature: domain Description: DUF905 Location: 6283-6481 bp Feature: gene Location: 11241-11564 bp Feature: gene Location: 11623-11865 bp Feature: gene Location: 12354-13370 bp Ori: BBR46685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12357-12681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2357-1 2681 bp Feature: domain Description: GIIM Note: maturase Location: 12732-12966 bp Feature: domain Description: GIIM Note: maturase Location: 1 2732-1 2966 bp Feature: domain Description: HNHc Note: nucleases Location: 13176-13335 bp Feature: domain Description: HNHc Note: nucleases Location: 1 31 76-1 3335 bp Feature: gene Location: 13382-14020 bp Ori: BBR46686.1 Feature: domain Description: RVT_N Location: 13430-13667 bp Feature: domain Description: RVT_N Location: 1 3430-1 3667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13718-14012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 8-1 401 2 bp Feature: gene Location: 15222-15518 bp Feature: gene Location: 15633-16454 bp Ori: BBR46688.1 Feature: domain Description: DUF932 Location: 15741-16419 bp Feature: domain Description: DUF932 Location: 1 5741 -1 641 9 bp Feature: gene Location: 88909-89358 bp Ori: BBR46776.1 Feature: domain Description: PRK10173 Location: 88912-89350 bp Feature: domain Description: PRK1 01 73 Location: 8891 2-89350 bp Feature: gene Location: 89333-89653 bp Ori: BBR46777.1 Feature: domain Description: PRK10173 Location: 89336-89564 bp Feature: domain Description: PRK1 01 73 Location: 89336-89564 bp Feature: gene Location: 89692-90195 bp Ori: BBR46778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89965-90037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89965-90037 bp Feature: gene Location: 90787-91266 bp Ori: BBR46779.1 Feature: domain Description: PHA02517 Location: 90847-91201 bp Feature: domain Description: PHA0251 7 Location: 90847-91 201 bp Feature: gene Location: 91266-91592 bp Ori: BBR46780.1 Feature: domain Description: InsE Location: 91269-91590 bp Feature: domain Description: InsE Location: 91 269-91 590 bp Feature: gene Location: 101948-102274 bp Ori: BBR46792.1 Feature: domain Description: InsE Location: 101951-102272 bp Feature: domain Description: InsE Location: 1 01 951 -1 02272 bp Feature: gene Location: 102274-102753 bp Ori: BBR46793.1 Feature: domain Description: PHA02517 Location: 102334-102688 bp Feature: domain Description: PHA0251 7 Location: 1 02334-1 02688 bp Feature: gene Location: 103344-104867 bp Ori: BBR46794.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103617-104349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0361 7-1 04349 bp Feature: domain Description: GIIM Note: maturase Location: 104424-104622 bp Feature: domain Description: GIIM Note: maturase Location: 1 04424-1 04622 bp Feature: gene Location: 104984-105340 bp Ori: BBR46795.1 Feature: domain Description: PHA02517 Location: 104987-105296 bp Feature: domain Description: PHA0251 7 Location: 1 04987-1 05296 bp Feature: gene Location: 105369-105773 bp Ori: BBR46796.1 Feature: domain Description: InsE Location: 105399-105735 bp Feature: domain Description: InsE Location: 1 05399-1 05735 bp Feature: gene Location: 144703-145125 bp Ori: BBR46844.1 Gene: yubJ Feature: domain Description: DUF1380 Location: 144706-145000 bp Feature: domain Description: DUF1 380 Location: 1 44706-1 45000 bp Feature: gene Location: 145122-145313 bp Feature: gene Location: 145633-146907 bp Ori: BBR46846.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145636-146218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45636-1 4621 8 bp Feature: domain Description: GIIM Note: maturase Location: 146269-146503 bp Feature: domain Description: GIIM Note: maturase Location: 1 46269-1 46503 bp Feature: domain Description: HNHc Note: nucleases Location: 146713-146872 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4671 3-1 46872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), RVT_N (pfam13655), DUF932 (pfam06067), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), PHA02517 (putative transposase OrfB; Reviewed)
InsE (COG2963), DUF1380 (pfam07128)

Seq: AP022044.1 Escherichia coli DNA, complete genome, strain: WP4-S17-ESBL-03 (5040845 bp)
Overview 1 RT 1: 2796508-2802844 bp Neighborhood of RT #1 [2796508, 2802852] RVT-Retrons PRK11388 Feature: gene Location: 2796508-2797635 bp Feature: gene Location: 2797693-2797860 bp Feature: gene Location: 2798316-2799641 bp Ori: BBR44568.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2798460-2799078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 798460-2 799078 bp Feature: gene Location: 2800212-2800451 bp Feature: gene Location: 2800933-2802852 bp Ori: BBR44570.1 Feature: domain Description: PRK11388 Location: 2800936-2802844 bp Feature: domain Description: PRK11388 Location: 2 800936-2 802 844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)