myRT

myRT report for GCA_014169035.1_ASM1416903v1

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Seq: AP022050.1 Escherichia coli plasmid pWP4-S17-ESBL-08_1 DNA, complete genome, strain: WP4-S17-ESBL-08 (121254 bp)
Overview 1 RT 1: 117546-119723 bp Neighborhood of RT #1 [117546, 119758] AdoMet_MTases RVT-GII GIIM HNHc Feature: gene Location: 117546-118109 bp Ori: BBR51654.1 Feature: domain Description: AdoMet_MTases Location: 117708-118008 bp Feature: domain Description: AdoMet_MTases Location: 1 1 7708-1 1 8008 bp Feature: gene Location: 118109-118369 bp Feature: gene Location: 118484-119758 bp Ori: BBR51656.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118487-119069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8487-1 1 9069 bp Feature: domain Description: GIIM Note: maturase Location: 119120-119354 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 91 20-1 1 9354 bp Feature: domain Description: HNHc Note: nucleases Location: 119564-119723 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 9564-1 1 9723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AP022049.1 Escherichia coli DNA, complete genome, strain: WP4-S17-ESBL-08 (5067025 bp)
Overview 1 RT 1: 881030-886080 bp 2 RT 2: 1982980-1987642 bp 3 RT 3: 1996227-2002069 bp 4 RT 4: 3918678-3924787 bp 5 RT 5: 4522260-4527597 bp Neighborhood of RT #1 [881030, 886121] COG4584 PHA02517 RVT-GII GIIM PHA02517 FaeA Neighborhood of RT #2 [1982980, 1987659] TnpB_IS66 InsE RVT-GII GIIM PHA02517 FadR Neighborhood of RT #3 [1996227, 2002104] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Neighborhood of RT #4 [3918678, 3924846] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Neighborhood of RT #5 [4522260, 4527605] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 881030-882202 bp Ori: BBR47687.1 Gene: istA Feature: domain Description: COG4584 Location: 881033-881870 bp Feature: domain Description: COG4584 Location: 881033-881870 bp Feature: gene Location: 882419-882658 bp Ori: BBR47688.1 Feature: domain Description: PHA02517 Location: 882422-882593 bp Feature: domain Description: PHA02 517 Location: 882 42 2 -882 593 bp Feature: gene Location: 883250-884773 bp Ori: BBR47689.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883523-884255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88352 3-8842 55 bp Feature: domain Description: GIIM Note: maturase Location: 884330-884528 bp Feature: domain Description: GIIM Note: maturase Location: 884330-88452 8 bp Feature: gene Location: 884890-885249 bp Ori: BBR47690.1 Feature: domain Description: PHA02517 Location: 884893-885247 bp Feature: domain Description: PHA02 517 Location: 884893-8852 47 bp Feature: gene Location: 885900-886121 bp Ori: BBR47691.1 Gene: papI Feature: domain Description: FaeA Location: 885903-886080 bp Feature: domain Description: FaeA Location: 885903-886080 bp Feature: gene Location: 1982980-1983312 bp Ori: BBR48696.1 Feature: domain Description: TnpB_IS66 Location: 1983007-1983208 bp Feature: domain Description: TnpB_IS66 Location: 1983007-19832 08 bp Feature: gene Location: 1983859-1984170 bp Ori: BBR48697.1 Feature: domain Description: InsE Location: 1983862-1984153 bp Feature: domain Description: InsE Location: 1983862 -1984153 bp Feature: gene Location: 1985390-1986736 bp Ori: BBR48698.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985486-1986218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985486-19862 18 bp Feature: domain Description: GIIM Note: maturase Location: 1986293-1986491 bp Feature: domain Description: GIIM Note: maturase Location: 19862 93-1986491 bp Feature: gene Location: 1986865-1987305 bp Ori: BBR48699.1 Feature: domain Description: PHA02517 Location: 1986868-1987276 bp Feature: domain Description: PHA02 517 Location: 1986868-19872 76 bp Feature: gene Location: 1987525-1987659 bp Ori: BBR48700.1 Feature: domain Description: FadR Location: 1987540-1987642 bp Feature: domain Description: FadR Location: 1987540-1987642 bp Feature: gene Location: 1996227-1996505 bp Ori: BBR48710.1 Feature: domain Description: DUF5339 Location: 1996290-1996491 bp Feature: domain Description: DUF5339 Location: 19962 90-1996491 bp Feature: gene Location: 1996843-1997874 bp Ori: BBR48711.1 Gene: ansA Feature: domain Description: Asparaginase_2 Location: 1996933-1997866 bp Feature: domain Description: Asparaginase_2 Location: 1996933-1997866 bp Feature: gene Location: 1998398-1998844 bp Ori: BBR48712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1998704-1998806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1998704-1998806 bp Feature: gene Location: 1999490-2000851 bp Ori: BBR48713.1 Feature: domain Description: DcuC Location: 1999493-2000825 bp Feature: domain Description: DcuC Location: 1999493-2 00082 5 bp Feature: gene Location: 2000848-2002104 bp Ori: BBR48714.1 Feature: domain Description: PRK13381 Location: 2000854-2002069 bp Feature: domain Description: PRK13381 Location: 2 000854-2 002 069 bp Feature: gene Location: 3918678-3919598 bp Ori: BBR50496.1 Feature: domain Description: AbiEii Location: 3918720-3919461 bp Feature: domain Description: AbiEii Location: 391872 0-3919461 bp Feature: gene Location: 3919585-3920367 bp Ori: BBR50497.1 Feature: domain Description: AbiEi_3_N Location: 3919597-3919858 bp Feature: domain Description: AbiEi_3_N Location: 3919597-3919858 bp Feature: domain Description: AbiEi_3 Location: 3919870-3920326 bp Feature: domain Description: AbiEi_3 Location: 3919870-392 032 6 bp Feature: gene Location: 3920683-3923892 bp Ori: BBR50498.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3921211-3921700 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 392 12 11-392 1700 bp Feature: domain Description: nitrilase Location: 3923206-3923803 bp Feature: domain Description: nitrilase Location: 392 32 06-392 3803 bp Feature: gene Location: 3924239-3924709 bp Feature: gene Location: 3924706-3924846 bp Ori: BBR50500.1 Feature: domain Description: SfsB Location: 3924715-3924787 bp Feature: domain Description: SfsB Location: 392 4715-392 4787 bp Feature: gene Location: 4522260-4523177 bp Ori: BBR51042.1 Feature: domain Description: PFLE_PFLC Location: 4522296-4523151 bp Feature: domain Description: PFLE_PFLC Location: 452 2 2 96-452 3151 bp Feature: gene Location: 4523314-4524219 bp Feature: gene Location: 4524705-4525244 bp Ori: BBR51044.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4525035-4525113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 5035-452 5113 bp Feature: gene Location: 4525311-4525793 bp Ori: BBR51045.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4525320-4525560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 532 0-452 5560 bp Feature: domain Description: GIIM Note: maturase Location: 4525608-4525788 bp Feature: domain Description: GIIM Note: maturase Location: 452 5608-452 5788 bp Feature: gene Location: 4526115-4526303 bp Feature: gene Location: 4526376-4527605 bp Ori: BBR51047.1 Feature: domain Description: YesM Location: 4526856-4527597 bp Feature: domain Description: YesM Location: 452 6856-452 7597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), FaeA (pfam04703), TnpB_IS66 (pfam05717), InsE (COG2963), FadR (COG2186), DUF5339 (pfam17274), Asparaginase_2 (pfam01112)
DcuC (TIGR00771), PRK13381 (peptidase T; Provisional), AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423), PFLE_PFLC (TIGR02494), YesM (COG2972)