myRT

myRT report for GCA_014169115.1_ASM1416911v1

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Seq: AP022069.1 Escherichia coli DNA, complete genome, strain: WP4-W18-ESBL-09 (5289055 bp)
Overview 1 RT 1: 855339-859164 bp 2 RT 2: 3334326-3338774 bp 3 RT 3: 4050221-4056330 bp 4 RT 4: 4761692-4767029 bp Neighborhood of RT #1 [855339, 859164] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [3334326, 3338774] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #3 [4050221, 4056389] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Neighborhood of RT #4 [4761692, 4767037] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 855339-855665 bp Ori: BBR67256.1 Feature: domain Description: InsE Location: 855342-855663 bp Feature: domain Description: InsE Location: 855342-855663 bp Feature: gene Location: 855665-856144 bp Ori: BBR67257.1 Feature: domain Description: PHA02517 Location: 855725-856079 bp Feature: domain Description: PHA0251 7 Location: 855725-856079 bp Feature: gene Location: 856736-858190 bp Ori: BBR67258.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857009-857741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857009-857741 bp Feature: domain Description: GIIM Note: maturase Location: 857816-858014 bp Feature: domain Description: GIIM Note: maturase Location: 85781 6-85801 4 bp Feature: gene Location: 858375-858821 bp Ori: BBR67259.1 Feature: domain Description: PHA02517 Location: 858378-858819 bp Feature: domain Description: PHA0251 7 Location: 858378-85881 9 bp Feature: gene Location: 858703-859164 bp Feature: gene Location: 3334326-3335360 bp Ori: BBR69596.1 Feature: domain Description: Q Location: 3334329-3335352 bp Feature: domain Description: Q Location: 3334329-3335352 bp Feature: gene Location: 3335873-3337237 bp Ori: BBR69597.1 Feature: domain Description: FRG Location: 3336440-3336725 bp Feature: domain Description: FRG Location: 3336440-3336725 bp Feature: gene Location: 3337346-3338323 bp Ori: BBR69598.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3337553-3338096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3337553-3338096 bp Feature: gene Location: 3338262-3338582 bp Ori: BBR69599.1 Feature: domain Description: HTH_XRE Location: 3338277-3338436 bp Feature: domain Description: HTH_XRE Location: 3338277-3338436 bp Feature: gene Location: 3338619-3338774 bp Feature: gene Location: 4050221-4051141 bp Ori: BBR70224.1 Feature: domain Description: AbiEii Location: 4050263-4051004 bp Feature: domain Description: AbiEii Location: 4050263-4051 004 bp Feature: gene Location: 4051128-4051910 bp Ori: BBR70225.1 Feature: domain Description: AbiEi_3_N Location: 4051140-4051401 bp Feature: domain Description: AbiEi_3_N Location: 4051 1 40-4051 401 bp Feature: domain Description: AbiEi_3 Location: 4051413-4051869 bp Feature: domain Description: AbiEi_3 Location: 4051 41 3-4051 869 bp Feature: gene Location: 4052226-4055435 bp Ori: BBR70226.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4052754-4053243 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4052754-4053243 bp Feature: domain Description: nitrilase Location: 4054749-4055346 bp Feature: domain Description: nitrilase Location: 4054749-4055346 bp Feature: gene Location: 4055782-4056252 bp Feature: gene Location: 4056249-4056389 bp Ori: BBR70228.1 Feature: domain Description: SfsB Location: 4056258-4056330 bp Feature: domain Description: SfsB Location: 4056258-4056330 bp Feature: gene Location: 4761692-4762609 bp Ori: BBR70886.1 Feature: domain Description: PFLE_PFLC Location: 4761728-4762583 bp Feature: domain Description: PFLE_PFLC Location: 4761 728-4762583 bp Feature: gene Location: 4762746-4763651 bp Feature: gene Location: 4764137-4764676 bp Ori: BBR70888.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764467-4764545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764467-4764545 bp Feature: gene Location: 4764743-4765225 bp Ori: BBR70889.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764752-4764992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764752-4764992 bp Feature: domain Description: GIIM Note: maturase Location: 4765040-4765220 bp Feature: domain Description: GIIM Note: maturase Location: 4765040-4765220 bp Feature: gene Location: 4765547-4765735 bp Feature: gene Location: 4765808-4767037 bp Ori: BBR70891.1 Feature: domain Description: YesM Location: 4766288-4767029 bp Feature: domain Description: YesM Location: 4766288-4767029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), AbiEii (pfam08843), AbiEi_3_N (pfam17194)
AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423), PFLE_PFLC (TIGR02494), YesM (COG2972)

Seq: AP022070.1 Escherichia coli plasmid pWP4-W18-ESBL-09_1 DNA, complete genome, strain: WP4-W18-ESBL-09 (117617 bp)
Overview 1 RT 1: 1800-4475 bp 2 RT 2: 105235-109059 bp Neighborhood of RT #1 [1800, 4483] InsE PHA02517 RVT-GII PRK10173 PRK10173 Neighborhood of RT #2 [105235, 109061] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1800-2126 bp Ori: BBR71350.1 Feature: domain Description: InsE Location: 1803-2124 bp Feature: domain Description: InsE Location: 1803-2 12 4 bp Feature: gene Location: 2126-2605 bp Ori: BBR71351.1 Feature: domain Description: PHA02517 Location: 2186-2540 bp Feature: domain Description: PHA02 517 Location: 2 186-2 540 bp Feature: gene Location: 3197-3700 bp Ori: BBR71352.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3470-3539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3470-3539 bp Feature: gene Location: 3739-4059 bp Ori: BBR71353.1 Feature: domain Description: PRK10173 Location: 3742-3970 bp Feature: domain Description: PRK10173 Location: 3742 -3970 bp Feature: gene Location: 4034-4483 bp Ori: BBR71354.1 Feature: domain Description: PRK10173 Location: 4037-4475 bp Feature: domain Description: PRK10173 Location: 4037-4475 bp Feature: gene Location: 105235-105639 bp Ori: BBR71466.1 Feature: domain Description: InsE Location: 105265-105601 bp Feature: domain Description: InsE Location: 1052 65-105601 bp Feature: gene Location: 105668-106024 bp Ori: BBR71467.1 Feature: domain Description: PHA02517 Location: 105671-105980 bp Feature: domain Description: PHA02 517 Location: 105671-105980 bp Feature: gene Location: 106141-107664 bp Ori: BBR71468.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106414-107146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106414-107146 bp Feature: domain Description: GIIM Note: maturase Location: 107221-107419 bp Feature: domain Description: GIIM Note: maturase Location: 1072 2 1-107419 bp Feature: gene Location: 108256-108735 bp Ori: BBR71469.1 Feature: domain Description: PHA02517 Location: 108316-108670 bp Feature: domain Description: PHA02 517 Location: 108316-108670 bp Feature: gene Location: 108735-109061 bp Ori: BBR71470.1 Feature: domain Description: InsE Location: 108738-109059 bp Feature: domain Description: InsE Location: 108738-109059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), GIIM (pfam08388)