myRT

myRT report for GCA_014169135.1_ASM1416913v1

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Seq: AP022086.1 Klebsiella quasipneumoniae plasmid pWP4-S18-ESBL-06_1 DNA, complete genome, strain: WP4-S18-ESBL-06 (281370 bp)
Overview 1 RT 1: 25949-32783 bp 2 RT 2: 170971-175983 bp Neighborhood of RT #1 [25949, 32791] cas7_csf2 RVT-GII PRK10276 umuC Neighborhood of RT #2 [170971, 175983] HHA RVT-GII INT_Cre_C Feature: gene Location: 25949-26980 bp Ori: BBR85874.1 Feature: domain Description: cas7_csf2 Location: 25997-26915 bp Feature: domain Description: cas7_csf2 Location: 25997-2691 5 bp Feature: gene Location: 27364-27870 bp Feature: gene Location: 29202-30686 bp Ori: BBR85876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29604-30294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29604-30294 bp Feature: gene Location: 31098-31520 bp Ori: BBR85877.1 Feature: domain Description: PRK10276 Location: 31104-31506 bp Feature: domain Description: PRK1 0276 Location: 31 1 04-31 506 bp Feature: gene Location: 31520-32791 bp Ori: BBR85878.1 Gene: samB Feature: domain Description: umuC Location: 31523-32783 bp Feature: domain Description: umuC Location: 31 523-32783 bp Feature: gene Location: 170971-172038 bp Feature: gene Location: 172124-172378 bp Ori: BBR86008.1 Feature: domain Description: HHA Location: 172175-172358 bp Feature: domain Description: HHA Location: 1 721 75-1 72358 bp Feature: gene Location: 172894-174378 bp Ori: BBR86009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173296-173986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 73296-1 73986 bp Feature: gene Location: 174464-175600 bp Ori: BBR86010.1 Feature: domain Description: INT_Cre_C Location: 174887-175541 bp Feature: domain Description: INT_Cre_C Location: 1 74887-1 75541 bp Feature: gene Location: 175666-175983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas7_csf2 (TIGR03115), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), HHA (pfam05321), INT_Cre_C (cd00799)

Seq: AP022085.1 Klebsiella quasipneumoniae DNA, complete genome, strain: WP4-S18-ESBL-06 (5326168 bp)
Overview 1 RT 1: 84700-89471 bp 2 RT 2: 660719-663779 bp 3 RT 3: 4256944-4264236 bp Neighborhood of RT #1 [84700, 89485] PRK09678 Psu RVT-Retrons PRK09692 Neighborhood of RT #2 [660719, 663779] DinI RVT-Retrons Neighborhood of RT #3 [4256944, 4264241] proA RVT-Retrons MalT Feature: gene Location: 84700-84945 bp Ori: BBR81055.1 Feature: domain Description: PRK09678 Location: 84703-84868 bp Feature: domain Description: PRK09678 Location: 84703-84868 bp Feature: gene Location: 84962-85528 bp Ori: BBR81056.1 Feature: domain Description: Psu Location: 84980-85520 bp Feature: domain Description: Psu Location: 84980-8552 0 bp Feature: gene Location: 85983-87470 bp Ori: BBR81057.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86691-87246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86691-872 46 bp Feature: gene Location: 87471-88121 bp Feature: gene Location: 89036-89485 bp Ori: BBR81059.1 Feature: domain Description: PRK09692 Location: 89045-89471 bp Feature: domain Description: PRK09692 Location: 89045-89471 bp Feature: gene Location: 660719-661159 bp Ori: BBR81600.1 Feature: domain Description: DinI Location: 660974-661157 bp Feature: domain Description: DinI Location: 660974-661157 bp Feature: gene Location: 661588-661743 bp Feature: gene Location: 662066-663016 bp Ori: BBR81602.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 662246-662789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 662 2 46-662 789 bp Feature: gene Location: 663086-663445 bp Feature: gene Location: 663585-663779 bp Feature: gene Location: 4256944-4258197 bp Ori: BBR84910.1 Gene: proA Feature: domain Description: proA Location: 4256971-4258162 bp Feature: domain Description: proA Location: 42 56971-42 58162 bp Feature: gene Location: 4259438-4260313 bp Feature: gene Location: 4260315-4261247 bp Ori: BBR84912.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4260417-4261011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 60417-42 61011 bp Feature: gene Location: 4261409-4261552 bp Feature: gene Location: 4261716-4264241 bp Ori: BBR84914.1 Feature: domain Description: MalT Location: 4261725-4264236 bp Feature: domain Description: MalT Location: 42 6172 5-42 642 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons, PRK09692 (Integrase; provisional), DinI (pfam06183), proA (TIGR00407), MalT (COG2909)