myRT

myRT report for GCA_014169375.1_ASM1416937v1

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Seq: AP022157.1 Klebsiella pneumoniae DNA, complete genome, strain: WP5-S18-ESBL-06 (5144614 bp)
Overview 1 RT 1: 1180827-1187468 bp 2 RT 2: 4516638-4526346 bp Neighborhood of RT #1 [1180827, 1187509] HTH_XRE RVT-Retrons COG3440 Neighborhood of RT #2 [4516638, 4526366] AAA_13 AAA_13 COG0610 RVT-Retrons AAA_15 AAA_15 COG2958 Feature: gene Location: 1180827-1181066 bp Feature: gene Location: 1181118-1181408 bp Ori: BBS51609.1 Feature: domain Description: HTH_XRE Location: 1181130-1181295 bp Feature: domain Description: HTH_XRE Location: 1 1 81 1 30-1 1 81 295 bp Feature: gene Location: 1181389-1182360 bp Ori: BBS51610.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1181539-1182106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 81 539-1 1 821 06 bp Feature: gene Location: 1182401-1186252 bp Feature: gene Location: 1186451-1187509 bp Ori: BBS51612.1 Feature: domain Description: COG3440 Location: 1187081-1187468 bp Feature: domain Description: COG3440 Location: 1 1 87081 -1 1 87468 bp Feature: gene Location: 4516638-4517816 bp Ori: BBS54668.1 Gene: prrC Feature: domain Description: AAA_13 Location: 4516731-4516905 bp Feature: domain Description: AAA_1 3 Location: 451 6731 -451 6905 bp Feature: domain Description: AAA_13 Location: 4517127-4517700 bp Feature: domain Description: AAA_1 3 Location: 451 71 27-451 7700 bp Feature: gene Location: 4517809-4520928 bp Ori: BBS54669.1 Feature: domain Description: COG0610 Location: 4517893-4520905 bp Feature: domain Description: COG061 0 Location: 451 7893-4520905 bp Feature: gene Location: 4521470-4522570 bp Ori: BBS54670.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4521611-4522175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4521 61 1 -45221 75 bp Feature: gene Location: 4522743-4524860 bp Ori: BBS54671.1 Feature: domain Description: AAA_15 Location: 4522746-4523163 bp Feature: domain Description: AAA_1 5 Location: 4522746-45231 63 bp Feature: domain Description: AAA_15 Location: 4523301-4523727 bp Feature: domain Description: AAA_1 5 Location: 4523301 -4523727 bp Feature: gene Location: 4525434-4526366 bp Ori: BBS54672.1 Feature: domain Description: COG2958 Location: 4525452-4526346 bp Feature: domain Description: COG2958 Location: 4525452-4526346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, COG3440 (Predicted restriction endonuclease ), AAA_13 (pfam13166), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AAA_15 (pfam13175), COG2958 (Uncharacterized protein )

Seq: AP022158.1 Klebsiella pneumoniae plasmid pWP5-S18-ESBL-06_1 DNA, complete genome, strain: WP5-S18-ESBL-06 (242118 bp)
Overview 1 RT 1: 18209-23249 bp Neighborhood of RT #1 [18209, 23251] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 18209-19480 bp Ori: BBS55225.1 Gene: samB Feature: domain Description: umuC Location: 18212-19475 bp Feature: domain Description: umuC Location: 182 12 -19475 bp Feature: gene Location: 19480-19905 bp Ori: BBS55226.1 Feature: domain Description: PRK10276 Location: 19483-19891 bp Feature: domain Description: PRK102 76 Location: 19483-19891 bp Feature: gene Location: 20385-21842 bp Ori: BBS55227.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20712-21450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0712 -2 1450 bp Feature: gene Location: 22076-22306 bp Feature: gene Location: 22826-23251 bp Ori: BBS55229.1 Feature: domain Description: Antirestrict Location: 22961-23249 bp Feature: domain Description: Antirestrict Location: 2 2 961-2 32 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)