myRT

myRT report for GCA_014169455.1_ASM1416945v1

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Seq: AP022173.1 Escherichia coli DNA, complete genome, strain: WP7-S17-ESBL-01 (5171886 bp)
Overview 1 RT 1: 724395-730687 bp 2 RT 2: 879406-883605 bp 3 RT 3: 1933675-1938537 bp 4 RT 4: 4000621-4004833 bp 5 RT 5: 4063813-4070280 bp 6 RT 6: 4078836-4085055 bp 7 RT 7: 4539240-4543011 bp 8 RT 8: 4986661-4991172 bp Neighborhood of RT #1 [724395, 730722] Asparaginase_2 DDE_Tnp_1_5 RVT-GII DcuC PRK13381 Neighborhood of RT #2 [879406, 883607] IrmA PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [1933675, 1938668] HTH_XRE RVT-Retrons FRG COG4584 COG4584 Neighborhood of RT #4 [4000621, 4004841] PRK11433 PHA02517 RVT-GII GIIM InsE PRK11433 Neighborhood of RT #5 [4063813, 4070372] FlhA InsE RVT-GII GIIM PHA02517 RAYT Neighborhood of RT #6 [4078836, 4085055] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Neighborhood of RT #7 [4539240, 4543025] DUF2254 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #8 [4986661, 4991172] YcjR InsE RVT-GII GIIM PHA02517 Feature: gene Location: 724395-725426 bp Ori: BBS71039.1 Gene: ansA Feature: domain Description: Asparaginase_2 Location: 724485-725418 bp Feature: domain Description: Asparaginase_2 Location: 724485-72541 8 bp Feature: gene Location: 725606-726529 bp Ori: BBS71040.1 Feature: domain Description: DDE_Tnp_1_5 Location: 725663-725996 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 725663-725996 bp Feature: gene Location: 727016-727462 bp Ori: BBS71041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727322-727424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727322-727424 bp Feature: gene Location: 728108-729469 bp Ori: BBS71042.1 Feature: domain Description: DcuC Location: 728111-729443 bp Feature: domain Description: DcuC Location: 7281 1 1 -729443 bp Feature: gene Location: 729466-730722 bp Ori: BBS71043.1 Feature: domain Description: PRK13381 Location: 729472-730687 bp Feature: domain Description: PRK1 3381 Location: 729472-730687 bp Feature: gene Location: 879406-879861 bp Ori: BBS71193.1 Feature: domain Description: IrmA Location: 879499-879814 bp Feature: domain Description: IrmA Location: 879499-87981 4 bp Feature: gene Location: 880124-880495 bp Ori: BBS71194.1 Feature: domain Description: PHA02517 Location: 880127-880493 bp Feature: domain Description: PHA0251 7 Location: 8801 27-880493 bp Feature: gene Location: 880687-882210 bp Ori: BBS71195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880960-881692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880960-881 692 bp Feature: domain Description: GIIM Note: maturase Location: 881767-881965 bp Feature: domain Description: GIIM Note: maturase Location: 881 767-881 965 bp Feature: gene Location: 882802-883281 bp Ori: BBS71196.1 Feature: domain Description: PHA02517 Location: 882862-883216 bp Feature: domain Description: PHA0251 7 Location: 882862-88321 6 bp Feature: gene Location: 883281-883607 bp Ori: BBS71197.1 Feature: domain Description: InsE Location: 883284-883605 bp Feature: domain Description: InsE Location: 883284-883605 bp Feature: gene Location: 1933675-1933830 bp Feature: gene Location: 1933867-1934187 bp Ori: BBS72176.1 Feature: domain Description: HTH_XRE Location: 1933882-1934041 bp Feature: domain Description: HTH_XRE Location: 1 933882-1 934041 bp Feature: gene Location: 1934126-1935103 bp Ori: BBS72177.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1934333-1934876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 934333-1 934876 bp Feature: gene Location: 1935212-1936576 bp Ori: BBS72178.1 Feature: domain Description: FRG Location: 1935779-1936064 bp Feature: domain Description: FRG Location: 1 935779-1 936064 bp Feature: gene Location: 1937127-1938668 bp Ori: BBS72179.1 Feature: domain Description: COG4584 Location: 1937232-1938018 bp Feature: domain Description: COG4584 Location: 1 937232-1 93801 8 bp Feature: domain Description: COG4584 Location: 1938138-1938537 bp Feature: domain Description: COG4584 Location: 1 9381 38-1 938537 bp Feature: gene Location: 4000621-4000860 bp Ori: BBS74140.1 Feature: domain Description: PRK11433 Location: 4000660-4000831 bp Feature: domain Description: PRK1 1 433 Location: 4000660-4000831 bp Feature: gene Location: 4000830-4001270 bp Ori: BBS74141.1 Feature: domain Description: PHA02517 Location: 4000833-4001241 bp Feature: domain Description: PHA0251 7 Location: 4000833-4001 241 bp Feature: gene Location: 4001399-4002922 bp Ori: BBS74142.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4001672-4002404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4001 672-4002404 bp Feature: domain Description: GIIM Note: maturase Location: 4002479-4002677 bp Feature: domain Description: GIIM Note: maturase Location: 4002479-4002677 bp Feature: gene Location: 4003966-4004277 bp Ori: BBS74143.1 Feature: domain Description: InsE Location: 4003969-4004260 bp Feature: domain Description: InsE Location: 4003969-4004260 bp Feature: gene Location: 4004350-4004841 bp Ori: BBS74144.1 Feature: domain Description: PRK11433 Location: 4004353-4004833 bp Feature: domain Description: PRK1 1 433 Location: 4004353-4004833 bp Feature: gene Location: 4063813-4065906 bp Ori: BBS74211.1 Gene: fhiA Feature: domain Description: FlhA Location: 4063825-4065901 bp Feature: domain Description: FlhA Location: 4063825-4065901 bp Feature: gene Location: 4066270-4066581 bp Ori: BBS74212.1 Feature: domain Description: InsE Location: 4066273-4066564 bp Feature: domain Description: InsE Location: 4066273-4066564 bp Feature: gene Location: 4067624-4069147 bp Ori: BBS74213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067897-4068629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067897-4068629 bp Feature: domain Description: GIIM Note: maturase Location: 4068704-4068902 bp Feature: domain Description: GIIM Note: maturase Location: 4068704-4068902 bp Feature: gene Location: 4069276-4069716 bp Ori: BBS74214.1 Feature: domain Description: PHA02517 Location: 4069279-4069687 bp Feature: domain Description: PHA0251 7 Location: 4069279-4069687 bp Feature: gene Location: 4069875-4070372 bp Ori: BBS74215.1 Gene: yafM Feature: domain Description: RAYT Location: 4069878-4070280 bp Feature: domain Description: RAYT Location: 4069878-4070280 bp Feature: gene Location: 4078836-4079339 bp Feature: gene Location: 4079459-4080595 bp Ori: BBS74225.1 Gene: yhhI Feature: domain Description: YhhI Location: 4079462-4079825 bp Feature: domain Description: YhhI Location: 4079462-4079825 bp Feature: domain Description: YhhI Location: 4079882-4080236 bp Feature: domain Description: YhhI Location: 4079882-4080236 bp Feature: domain Description: YhhI Location: 4080254-4080497 bp Feature: domain Description: YhhI Location: 4080254-4080497 bp Feature: gene Location: 4081042-4082292 bp Ori: BBS74226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4081246-4081903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4081 246-4081 903 bp Feature: domain Description: GIIM Note: maturase Location: 4081984-4082206 bp Feature: domain Description: GIIM Note: maturase Location: 4081 984-4082206 bp Feature: gene Location: 4082824-4083780 bp Ori: BBS74227.1 Gene: yhhI Feature: domain Description: YhhI Location: 4082827-4083172 bp Feature: domain Description: YhhI Location: 4082827-40831 72 bp Feature: domain Description: YhhI Location: 4083229-4083583 bp Feature: domain Description: YhhI Location: 4083229-4083583 bp Feature: domain Description: YhhI Location: 4083583-4083763 bp Feature: domain Description: YhhI Location: 4083583-4083763 bp Feature: gene Location: 4084093-4085055 bp Feature: gene Location: 4539240-4539653 bp Ori: BBS74631.1 Feature: domain Description: DUF2254 Location: 4539282-4539579 bp Feature: domain Description: DUF2254 Location: 4539282-4539579 bp Feature: gene Location: 4539588-4539962 bp Ori: BBS74632.1 Feature: domain Description: PHA02517 Location: 4539591-4539951 bp Feature: domain Description: PHA0251 7 Location: 4539591 -4539951 bp Feature: gene Location: 4540157-4541680 bp Ori: BBS74633.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4540430-4541162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4540430-4541 1 62 bp Feature: domain Description: GIIM Note: maturase Location: 4541237-4541435 bp Feature: domain Description: GIIM Note: maturase Location: 4541 237-4541 435 bp Feature: gene Location: 4542272-4542511 bp Ori: BBS74634.1 Feature: domain Description: PHA02517 Location: 4542275-4542446 bp Feature: domain Description: PHA0251 7 Location: 4542275-4542446 bp Feature: gene Location: 4542753-4543025 bp Ori: BBS74635.1 Feature: domain Description: InsE Location: 4542762-4543011 bp Feature: domain Description: InsE Location: 4542762-454301 1 bp Feature: gene Location: 4986661-4987275 bp Ori: BBS75025.1 Feature: domain Description: YcjR Location: 4986730-4987027 bp Feature: domain Description: YcjR Location: 4986730-4987027 bp Feature: gene Location: 4987360-4987671 bp Ori: BBS75026.1 Feature: domain Description: InsE Location: 4987363-4987654 bp Feature: domain Description: InsE Location: 4987363-4987654 bp Feature: gene Location: 4988715-4990238 bp Ori: BBS75027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4988988-4989720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4988988-4989720 bp Feature: domain Description: GIIM Note: maturase Location: 4989795-4989993 bp Feature: domain Description: GIIM Note: maturase Location: 4989795-4989993 bp Feature: gene Location: 4990367-4990807 bp Ori: BBS75028.1 Feature: domain Description: PHA02517 Location: 4990370-4990778 bp Feature: domain Description: PHA0251 7 Location: 4990370-4990778 bp Feature: gene Location: 4990777-4991172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), DDE_Tnp_1_5 (pfam13737), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional), IrmA (pfam18673), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), InsE (COG2963), HTH_XRE (smart00530)
RVT-Retrons, FRG (smart00901), COG4584 (Transposase ), PRK11433 (aldehyde oxidoreductase 2Fe-2S subunit; Provisional), FlhA (TIGR01398), RAYT (COG1943), YhhI (COG5433), DUF2254 (pfam10011), YcjR (COG1082)