myRT

myRT report for GCA_014169775.1_ASM1416977v1

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Seq: AP022262.1 Escherichia coli plasmid pWP8-S18-ESBL-07_1 DNA, complete genome, strain: WP8-S18-ESBL-07 (126588 bp)
Overview 1 RT 1: 90971-95799 bp Neighborhood of RT #1 [90971, 95834] RVT-GII GIIM HNHc DUF932 Feature: gene Location: 90971-91213 bp Feature: gene Location: 91450-91623 bp Feature: gene Location: 91738-93012 bp Ori: BBT78195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91741-92323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 741 -92323 bp Feature: domain Description: GIIM Note: maturase Location: 92374-92608 bp Feature: domain Description: GIIM Note: maturase Location: 92374-92608 bp Feature: domain Description: HNHc Note: nucleases Location: 92818-92977 bp Feature: domain Description: HNHc Note: nucleases Location: 9281 8-92977 bp Feature: gene Location: 94607-94903 bp Feature: gene Location: 95013-95834 bp Ori: BBT78197.1 Feature: domain Description: DUF932 Location: 95121-95799 bp Feature: domain Description: DUF932 Location: 951 21 -95799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF932 (pfam06067)

Seq: AP022261.1 Escherichia coli DNA, complete genome, strain: WP8-S18-ESBL-07 (4907327 bp)
Overview 1 RT 1: 1980844-1987308 bp 2 RT 2: 3770421-3775916 bp 3 RT 3: 4187194-4192345 bp 4 RT 4: 4203487-4208051 bp Neighborhood of RT #1 [1980844, 1987319] Phage_tail_T InsE RVT-GII GIIM PHA02517 COG5281 Neighborhood of RT #2 [3770421, 3776248] YhhI YhhI YhhI RVT-GII GIIM PRK09183 COG4584 Neighborhood of RT #3 [4187194, 4192347] fecE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4203487, 4208092] InsE PHA02517 RVT-GII GIIM PHA02517 Arm-DNA-bind_3 Feature: gene Location: 1980844-1981221 bp Ori: BBT75385.1 Feature: domain Description: Phage_tail_T Location: 1980901-1981132 bp Feature: domain Description: Phage_tail_T Location: 1980901-1981132 bp Feature: gene Location: 1981264-1981575 bp Ori: BBT75386.1 Feature: domain Description: InsE Location: 1981267-1981558 bp Feature: domain Description: InsE Location: 19812 67-1981558 bp Feature: gene Location: 1982619-1984142 bp Ori: BBT75387.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982892-1983624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982 892 -198362 4 bp Feature: domain Description: GIIM Note: maturase Location: 1983699-1983897 bp Feature: domain Description: GIIM Note: maturase Location: 1983699-1983897 bp Feature: gene Location: 1984271-1984711 bp Ori: BBT75388.1 Feature: domain Description: PHA02517 Location: 1984274-1984682 bp Feature: domain Description: PHA02 517 Location: 19842 74-1984682 bp Feature: gene Location: 1984758-1987319 bp Ori: BBT75389.1 Feature: domain Description: COG5281 Location: 1984761-1987308 bp Feature: domain Description: COG52 81 Location: 1984761-1987308 bp Feature: gene Location: 3770421-3770924 bp Feature: gene Location: 3771044-3772180 bp Ori: BBT77060.1 Gene: yhhI Feature: domain Description: YhhI Location: 3771047-3771410 bp Feature: domain Description: YhhI Location: 3771047-3771410 bp Feature: domain Description: YhhI Location: 3771467-3771821 bp Feature: domain Description: YhhI Location: 3771467-377182 1 bp Feature: domain Description: YhhI Location: 3771839-3772082 bp Feature: domain Description: YhhI Location: 3771839-3772 082 bp Feature: gene Location: 3772627-3773877 bp Ori: BBT77061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3772831-3773488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3772 831-3773488 bp Feature: domain Description: GIIM Note: maturase Location: 3773569-3773791 bp Feature: domain Description: GIIM Note: maturase Location: 3773569-3773791 bp Feature: gene Location: 3774306-3775100 bp Ori: BBT77062.1 Gene: istB Feature: domain Description: PRK09183 Location: 3774315-3775053 bp Feature: domain Description: PRK09183 Location: 3774315-3775053 bp Feature: gene Location: 3775100-3776248 bp Ori: BBT77063.1 Gene: istA Feature: domain Description: COG4584 Location: 3775106-3775916 bp Feature: domain Description: COG4584 Location: 3775106-3775916 bp Feature: gene Location: 4187194-4187961 bp Ori: BBT77428.1 Gene: fecE Feature: domain Description: fecE Location: 4187197-4187959 bp Feature: domain Description: fecE Location: 4187197-4187959 bp Feature: gene Location: 4188519-4188776 bp Feature: gene Location: 4189427-4190950 bp Ori: BBT77430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4189700-4190432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4189700-4190432 bp Feature: domain Description: GIIM Note: maturase Location: 4190507-4190705 bp Feature: domain Description: GIIM Note: maturase Location: 4190507-4190705 bp Feature: gene Location: 4191542-4192021 bp Ori: BBT77431.1 Feature: domain Description: PHA02517 Location: 4191602-4191956 bp Feature: domain Description: PHA02 517 Location: 4191602 -4191956 bp Feature: gene Location: 4192021-4192347 bp Ori: BBT77432.1 Feature: domain Description: InsE Location: 4192024-4192345 bp Feature: domain Description: InsE Location: 4192 02 4-4192 345 bp Feature: gene Location: 4203487-4203789 bp Ori: BBT77445.1 Feature: domain Description: InsE Location: 4203526-4203775 bp Feature: domain Description: InsE Location: 42 0352 6-42 03775 bp Feature: gene Location: 4204031-4204270 bp Ori: BBT77446.1 Feature: domain Description: PHA02517 Location: 4204034-4204205 bp Feature: domain Description: PHA02 517 Location: 42 04034-42 042 05 bp Feature: gene Location: 4204862-4206385 bp Ori: BBT77447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4205135-4205867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 05135-42 05867 bp Feature: domain Description: GIIM Note: maturase Location: 4205942-4206140 bp Feature: domain Description: GIIM Note: maturase Location: 42 05942 -42 06140 bp Feature: gene Location: 4206577-4206948 bp Ori: BBT77448.1 Feature: domain Description: PHA02517 Location: 4206580-4206946 bp Feature: domain Description: PHA02 517 Location: 42 06580-42 06946 bp Feature: gene Location: 4207790-4208092 bp Ori: BBT77449.1 Feature: domain Description: Arm-DNA-bind_3 Location: 4207799-4208051 bp Feature: domain Description: Arm-DNA-bind_3 Location: 42 07799-42 08051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_tail_T (pfam06223), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG5281 (Phage-related minor tail protein ), YhhI (COG5433), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), fecE (PRK11231)
Arm-DNA-bind_3 (pfam13356)