myRT

myRT report for GCA_014170655.1_ASM1417065v1

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Seq: AP021952.1 Klebsiella quasipneumoniae plasmid pWP3-W18-CRE-02_2 DNA, complete genome, strain: WP3-W18-CRE-02 (206811 bp)
Overview 1 RT 1: 192478-197959 bp Neighborhood of RT #1 [192478, 197967] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Feature: gene Location: 192478-193149 bp Ori: BBQ70739.1 Feature: domain Description: Plasmid_stab_B Location: 192493-192700 bp Feature: domain Description: Plasmid_stab_B Location: 1 92493-1 92700 bp Feature: domain Description: Plasmid_stab_B Location: 192805-193012 bp Feature: domain Description: Plasmid_stab_B Location: 1 92805-1 9301 2 bp Feature: gene Location: 193152-194123 bp Ori: BBQ70740.1 Feature: domain Description: StbA Location: 193155-194100 bp Feature: domain Description: StbA Location: 1 931 55-1 941 00 bp Feature: gene Location: 194372-195856 bp Ori: BBQ70741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194774-195464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 94774-1 95464 bp Feature: gene Location: 196265-196696 bp Ori: BBQ70742.1 Feature: domain Description: PRK10276 Location: 196316-196679 bp Feature: domain Description: PRK1 0276 Location: 1 9631 6-1 96679 bp Feature: gene Location: 196696-197967 bp Ori: BBQ70743.1 Feature: domain Description: umuC Location: 196699-197959 bp Feature: domain Description: umuC Location: 1 96699-1 97959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: AP021950.1 Klebsiella quasipneumoniae DNA, complete genome, strain: WP3-W18-CRE-02 (5370259 bp)
Overview 1 RT 1: 1872555-1879034 bp 2 RT 2: 2127696-2132265 bp 3 RT 3: 2918082-2923326 bp 4 RT 4: 3439380-3442711 bp 5 RT 5: 3659190-3665434 bp Neighborhood of RT #1 [1872555, 1879048] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [2127696, 2132265] RVT-GII PRK10597 Neighborhood of RT #3 [2918082, 2923340] PRK10276 RVT-GII SGNH_hydrolase_like_2 Neighborhood of RT #4 [3439380, 3442713] PRK11508 PRK14426 RVT-GII DDE_Tnp_IS1 Neighborhood of RT #5 [3659190, 3665481] UvrB RVT-GII LivF bioD Feature: gene Location: 1872555-1873979 bp Ori: BBQ66964.1 Gene: sbcB Feature: domain Description: SbcB Location: 1872561-1873977 bp Feature: domain Description: SbcB Location: 1872 561-1873977 bp Feature: gene Location: 1874160-1875323 bp Ori: BBQ66965.1 Gene: dacD Feature: domain Description: dacD Location: 1874163-1875318 bp Feature: domain Description: dacD Location: 1874163-1875318 bp Feature: gene Location: 1875852-1877336 bp Ori: BBQ66966.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1876254-1876944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18762 54-1876944 bp Feature: gene Location: 1877418-1877891 bp Ori: BBQ66967.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1877421-1877880 bp Feature: domain Description: PRK10016 Location: 187742 1-1877880 bp Feature: gene Location: 1877990-1879048 bp Ori: BBQ66968.1 Feature: domain Description: YccC Location: 1877996-1879034 bp Feature: domain Description: YccC Location: 1877996-1879034 bp Feature: gene Location: 2127696-2128307 bp Feature: gene Location: 2128307-2128495 bp Feature: gene Location: 2130152-2131636 bp Ori: BBQ67212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130554-2131244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 130554-2 1312 44 bp Feature: gene Location: 2131715-2131948 bp Ori: BBQ67213.1 Feature: domain Description: PRK10597 Location: 2131718-2131943 bp Feature: domain Description: PRK10597 Location: 2 131718-2 131943 bp Feature: gene Location: 2132098-2132265 bp Feature: gene Location: 2918082-2918399 bp Ori: BBQ68006.1 Feature: domain Description: PRK10276 Location: 2918088-2918211 bp Feature: domain Description: PRK102 76 Location: 2 918088-2 9182 11 bp Feature: gene Location: 2918399-2918638 bp Feature: gene Location: 2918716-2920200 bp Ori: BBQ68008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2919118-2919808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 919118-2 919808 bp Feature: gene Location: 2920615-2921361 bp Feature: gene Location: 2921376-2923340 bp Ori: BBQ68010.1 Feature: domain Description: SGNH_hydrolase_like_2 Location: 2922969-2923326 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 2 92 2 969-2 92 332 6 bp Feature: gene Location: 3439380-3439709 bp Ori: BBQ68519.1 Feature: domain Description: PRK11508 Location: 3439383-3439707 bp Feature: domain Description: PRK11508 Location: 3439383-3439707 bp Feature: gene Location: 3439706-3439996 bp Ori: BBQ68520.1 Feature: domain Description: PRK14426 Location: 3439727-3439988 bp Feature: domain Description: PRK1442 6 Location: 343972 7-3439988 bp Feature: gene Location: 3440132-3441616 bp Ori: BBQ68521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3440534-3441224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3440534-34412 2 4 bp Feature: gene Location: 3442071-3442409 bp Feature: gene Location: 3442420-3442713 bp Ori: BBQ68523.1 Feature: domain Description: DDE_Tnp_IS1 Location: 3442423-3442711 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3442 42 3-3442 711 bp Feature: gene Location: 3659190-3659282 bp Feature: gene Location: 3659455-3661476 bp Ori: BBQ68713.1 Gene: uvrB Feature: domain Description: UvrB Location: 3659461-3661462 bp Feature: domain Description: UvrB Location: 3659461-3661462 bp Feature: gene Location: 3661936-3663420 bp Ori: BBQ68714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3662338-3663028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3662 338-366302 8 bp Feature: gene Location: 3664095-3664817 bp Ori: BBQ68715.1 Feature: domain Description: LivF Location: 3664098-3664776 bp Feature: domain Description: LivF Location: 3664098-3664776 bp Feature: gene Location: 3664759-3665481 bp Ori: BBQ68716.1 Gene: bioD Feature: domain Description: bioD Location: 3664774-3665434 bp Feature: domain Description: bioD Location: 3664774-3665434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10597 (DNA damage-inducible protein I; Provisional), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), SGNH_hydrolase_like_2 (cd01834), PRK11508 (sulfurtransferase TusE), PRK14426 (acylphosphatase; Provisional)
DDE_Tnp_IS1 (pfam03400), UvrB (pfam12344), LivF (COG0410), bioD (TIGR00347)

Seq: AP021951.1 Klebsiella quasipneumoniae plasmid pWP3-W18-CRE-02_1 DNA, complete genome, strain: WP3-W18-CRE-02 (267818 bp)
Overview 1 RT 1: 128844-134026 bp 2 RT 2: 176902-181421 bp Neighborhood of RT #1 [128844, 134040] InsQ RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 PRK10276 Neighborhood of RT #2 [176902, 181421] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII Feature: gene Location: 128844-130031 bp Ori: BBQ70400.1 Feature: domain Description: InsQ Location: 128859-129981 bp Feature: domain Description: InsQ Location: 128859-129981 bp Feature: gene Location: 130399-131883 bp Ori: BBQ70401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130801-131491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 0801-13 1491 bp Feature: gene Location: 132330-133550 bp Ori: BBQ70402.1 Feature: domain Description: zf-ISL3 Location: 132462-132588 bp Feature: domain Description: zf-ISL3 Location: 13 2462-13 2588 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 132606-132753 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 13 2606-13 2753 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 132804-133509 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 13 2804-13 3 509 bp Feature: gene Location: 133618-134040 bp Ori: BBQ70403.1 Feature: domain Description: PRK10276 Location: 133624-134026 bp Feature: domain Description: PRK10276 Location: 13 3 624-13 4026 bp Feature: gene Location: 176902-177099 bp Feature: gene Location: 177351-178571 bp Ori: BBQ70446.1 Feature: domain Description: zf-ISL3 Location: 177483-177609 bp Feature: domain Description: zf-ISL3 Location: 177483 -177609 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 177627-177774 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 177627-177774 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 177825-178530 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 177825-17853 0 bp Feature: gene Location: 178979-180463 bp Ori: BBQ70447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179381-180071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793 81-180071 bp Feature: gene Location: 180639-180914 bp Feature: gene Location: 181128-181421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: AP021955.1 Klebsiella quasipneumoniae plasmid pWP3-W18-CRE-02_5 DNA, complete genome, strain: WP3-W18-CRE-02 (91316 bp)
Overview 1 RT 1: 436-6145 bp Neighborhood of RT #1 [436, 6156] DUF2913 InsE PHA02517 RVT-GII GIIM COG3547 PHA02517 Feature: gene Location: 436-1047 bp Ori: BBQ71006.1 Feature: domain Description: DUF2913 Location: 469-949 bp Feature: domain Description: DUF2913 Location: 4 69-94 9 bp Feature: gene Location: 1361-2098 bp Ori: BBQ71007.1 Feature: domain Description: InsE Location: 1373-1625 bp Feature: domain Description: InsE Location: 1373-1625 bp Feature: domain Description: PHA02517 Location: 1697-2033 bp Feature: domain Description: PHA02517 Location: 1697-2033 bp Feature: gene Location: 2690-4213 bp Ori: BBQ71008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2963-3695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2963-3695 bp Feature: domain Description: GIIM Note: maturase Location: 3770-3968 bp Feature: domain Description: GIIM Note: maturase Location: 3770-3968 bp Feature: gene Location: 4755-5831 bp Ori: BBQ71009.1 Feature: domain Description: COG3547 Location: 4794-5715 bp Feature: domain Description: COG354 7 Location: 4 794 -5715 bp Feature: gene Location: 5950-6156 bp Ori: BBQ71010.1 Feature: domain Description: PHA02517 Location: 5953-6145 bp Feature: domain Description: PHA02517 Location: 5953-614 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2913 (pfam11140), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )