myRT

myRT report for GCA_014170855.1_ASM1417085v1

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Seq: AP021983.1 Raoultella ornithinolytica DNA, complete genome, strain: WP3-W18-ESBL-06 (5626375 bp)
Overview 1 RT 1: 29642-34635 bp 2 RT 2: 1312736-1317573 bp 3 RT 3: 2022841-2026561 bp 4 RT 4: 2718507-2728126 bp 5 RT 5: 3628031-3635078 bp 6 RT 6: 3656683-3659838 bp 7 RT 7: 3898728-3904974 bp Neighborhood of RT #1 [29642, 34637] Acetyltransf_10 TisB_tox RVT-GII IlvB_leader PRK08155 Neighborhood of RT #2 [1312736, 1317779] PRK10597 RVT-GII Phage_GPA DUF5405 Neighborhood of RT #3 [2022841, 2026561] TPR RVT-GII Neighborhood of RT #4 [2718507, 2728236] BNR_4 RVT-GII 2A0106 Neighborhood of RT #5 [3628031, 3635080] YCCS TfoX RVT-GII sula PRK10808 Neighborhood of RT #6 [3656683, 3660287] PRK10276 RVT-GII HTH_Hin_like TIR_2 Neighborhood of RT #7 [3898728, 3905021] UvrB RVT-GII LivF bioD Feature: gene Location: 29642-30088 bp Ori: BBQ86899.1 Feature: domain Description: Acetyltransf_10 Location: 29759-30059 bp Feature: domain Description: Acetyltransf_1 0 Location: 29759-30059 bp Feature: gene Location: 30179-30268 bp Ori: BBQ86900.1 Feature: domain Description: TisB_tox Location: 30182-30266 bp Feature: domain Description: TisB_tox Location: 301 82-30266 bp Feature: gene Location: 30904-32391 bp Ori: BBQ86901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31309-31999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 309-31 999 bp Feature: gene Location: 32752-32847 bp Ori: BBQ86902.1 Feature: domain Description: IlvB_leader Location: 32755-32845 bp Feature: domain Description: IlvB_leader Location: 32755-32845 bp Feature: gene Location: 32949-34637 bp Ori: BBQ86903.1 Feature: domain Description: PRK08155 Location: 32952-34635 bp Feature: domain Description: PRK081 55 Location: 32952-34635 bp Feature: gene Location: 1312736-1312870 bp Ori: BBQ88129.1 Feature: domain Description: PRK10597 Location: 1312739-1312856 bp Feature: domain Description: PRK1 0597 Location: 1 31 2739-1 31 2856 bp Feature: gene Location: 1312874-1313056 bp Feature: gene Location: 1313459-1314946 bp Ori: BBQ88131.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313864-1314554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 3864-1 31 4554 bp Feature: gene Location: 1315087-1317210 bp Ori: BBQ88132.1 Gene: gpA Feature: domain Description: Phage_GPA Location: 1315411-1316353 bp Feature: domain Description: Phage_GPA Location: 1 31 541 1 -1 31 6353 bp Feature: gene Location: 1317306-1317779 bp Ori: BBQ88133.1 Feature: domain Description: DUF5405 Location: 1317327-1317573 bp Feature: domain Description: DUF5405 Location: 1 31 7327-1 31 7573 bp Feature: gene Location: 2022841-2023575 bp Ori: BBQ88758.1 Feature: domain Description: TPR Location: 2023000-2023162 bp Feature: domain Description: TPR Location: 2023000-20231 62 bp Feature: gene Location: 2023575-2023985 bp Feature: gene Location: 2024438-2025925 bp Ori: BBQ88760.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024843-2025533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024843-2025533 bp Feature: gene Location: 2026002-2026241 bp Feature: gene Location: 2026241-2026561 bp Feature: gene Location: 2718507-2720990 bp Feature: gene Location: 2721077-2724526 bp Ori: BBQ89444.1 Feature: domain Description: BNR_4 Location: 2723375-2724170 bp Feature: domain Description: BNR_4 Location: 2723375-27241 70 bp Feature: gene Location: 2725001-2726488 bp Ori: BBQ89445.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725406-2726096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725406-2726096 bp Feature: gene Location: 2726567-2726803 bp Feature: gene Location: 2727019-2728236 bp Ori: BBQ89447.1 Feature: domain Description: 2A0106 Location: 2727022-2728126 bp Feature: domain Description: 2A01 06 Location: 2727022-27281 26 bp Feature: gene Location: 3628031-3630166 bp Ori: BBQ90309.1 Feature: domain Description: YCCS Location: 3628055-3630146 bp Feature: domain Description: YCCS Location: 3628055-36301 46 bp Feature: gene Location: 3630154-3630777 bp Ori: BBQ90310.1 Feature: domain Description: TfoX Location: 3630184-3630517 bp Feature: domain Description: TfoX Location: 36301 84-363051 7 bp Feature: gene Location: 3631258-3632745 bp Ori: BBQ90311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631663-3632353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631 663-3632353 bp Feature: gene Location: 3633148-3633657 bp Ori: BBQ90312.1 Gene: sulA Feature: domain Description: sula Location: 3633154-3633655 bp Feature: domain Description: sula Location: 36331 54-3633655 bp Feature: gene Location: 3634010-3635080 bp Ori: BBQ90313.1 Feature: domain Description: PRK10808 Location: 3634013-3635078 bp Feature: domain Description: PRK1 0808 Location: 363401 3-3635078 bp Feature: gene Location: 3656683-3657000 bp Ori: BBQ90332.1 Feature: domain Description: PRK10276 Location: 3656689-3656968 bp Feature: domain Description: PRK1 0276 Location: 3656689-3656968 bp Feature: gene Location: 3657002-3657241 bp Feature: gene Location: 3657320-3658807 bp Ori: BBQ90334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657725-3658415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657725-365841 5 bp Feature: gene Location: 3659238-3659390 bp Ori: BBQ90335.1 Feature: domain Description: HTH_Hin_like Location: 3659241-3659349 bp Feature: domain Description: HTH_Hin_like Location: 3659241 -3659349 bp Feature: gene Location: 3659472-3660287 bp Ori: BBQ90336.1 Feature: domain Description: TIR_2 Location: 3659550-3659838 bp Feature: domain Description: TIR_2 Location: 3659550-3659838 bp Feature: gene Location: 3898728-3898820 bp Feature: gene Location: 3898967-3900988 bp Ori: BBQ90573.1 Gene: uvrB Feature: domain Description: UvrB Location: 3898973-3900974 bp Feature: domain Description: UvrB Location: 3898973-3900974 bp Feature: gene Location: 3901460-3902947 bp Ori: BBQ90574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3901865-3902555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3901 865-3902555 bp Feature: gene Location: 3903635-3904357 bp Ori: BBQ90575.1 Feature: domain Description: LivF Location: 3903638-3904316 bp Feature: domain Description: LivF Location: 3903638-390431 6 bp Feature: gene Location: 3904299-3905021 bp Ori: BBQ90576.1 Gene: bioD Feature: domain Description: bioD Location: 3904314-3904974 bp Feature: domain Description: bioD Location: 390431 4-3904974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), TisB_tox (TIGR04459), RVT-GII, IlvB_leader (pfam08049), PRK08155 (acetolactate synthase large subunit), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_GPA (pfam05840), DUF5405 (pfam17399), TPR (smart00028), BNR_4 (pfam15892)
2A0106 (TIGR00883), YCCS (TIGR01666), TfoX (COG3070), sula (TIGR00623), PRK10808 (outer membrane protein A; Reviewed), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), HTH_Hin_like (cd00569), TIR_2 (pfam13676), UvrB (pfam12344), LivF (COG0410)
bioD (TIGR00347)

Seq: AP021989.1 Raoultella ornithinolytica plasmid pWP3-W18-ESBL-06_6 DNA, complete genome, strain: WP3-W18-ESBL-06 (53995 bp)
Overview 1 RT 1: 31186-36539 bp Neighborhood of RT #1 [31186, 36676] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 31186-32457 bp Ori: BBQ92836.1 Feature: domain Description: umuC Location: 31189-32449 bp Feature: domain Description: umuC Location: 31189-32 449 bp Feature: gene Location: 32457-32888 bp Ori: BBQ92837.1 Feature: domain Description: PRK10276 Location: 32508-32871 bp Feature: domain Description: PRK102 76 Location: 32 508-32 871 bp Feature: gene Location: 33295-34782 bp Ori: BBQ92838.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33700-34390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33700-34390 bp Feature: gene Location: 35031-36002 bp Ori: BBQ92839.1 Feature: domain Description: StbA Location: 35034-35979 bp Feature: domain Description: StbA Location: 35034-35979 bp Feature: gene Location: 36005-36676 bp Ori: BBQ92840.1 Feature: domain Description: Plasmid_stab_B Location: 36020-36227 bp Feature: domain Description: Plasmid_stab_B Location: 3602 0-362 2 7 bp Feature: domain Description: Plasmid_stab_B Location: 36332-36539 bp Feature: domain Description: Plasmid_stab_B Location: 36332 -36539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: AP021988.1 Raoultella ornithinolytica plasmid pWP3-W18-ESBL-06_5 DNA, complete genome, strain: WP3-W18-ESBL-06 (79525 bp)
Overview 1 RT 1: 10195-14072 bp Neighborhood of RT #1 [10195, 14074] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 10195-10350 bp Ori: BBQ92730.1 Feature: domain Description: umuC Location: 10198-10342 bp Feature: domain Description: umuC Location: 10198-103 42 bp Feature: gene Location: 10350-11126 bp Ori: BBQ92731.1 Feature: domain Description: PRK10276 Location: 10704-11112 bp Feature: domain Description: PRK10276 Location: 10704-11112 bp Feature: gene Location: 11177-12664 bp Ori: BBQ92732.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11582-12272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11582-12272 bp Feature: gene Location: 12661-13128 bp Feature: gene Location: 13649-14074 bp Ori: BBQ92734.1 Feature: domain Description: Antirestrict Location: 13784-14072 bp Feature: domain Description: Antirestrict Location: 13 784-14072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: AP021984.1 Raoultella ornithinolytica plasmid pWP3-W18-ESBL-06_1 DNA, complete genome, strain: WP3-W18-ESBL-06 (251197 bp)
Overview 1 RT 1: 86502-92746 bp 2 RT 2: 137378-142524 bp Neighborhood of RT #1 [86502, 92746] DEXHc_HLTF1_SMARC3 HTH_28 rve RVT-GII RVT-GII Neighborhood of RT #2 [137378, 142574] PRK10276 zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII InsQ Feature: gene Location: 86502-86891 bp Ori: BBQ92234.1 Feature: domain Description: DEXHc_HLTF1_SMARC3 Location: 86610-86838 bp Feature: domain Description: DEXHc_HLTF1_SMARC3 Location: 86610-86838 bp Feature: gene Location: 86879-87904 bp Ori: BBQ92235.1 Feature: domain Description: HTH_28 Location: 86927-87068 bp Feature: domain Description: HTH_28 Location: 86927-87068 bp Feature: domain Description: rve Location: 87308-87674 bp Feature: domain Description: rve Location: 87308-87674 bp Feature: gene Location: 88097-89584 bp Ori: BBQ92236.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88502-89192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88502-89192 bp Feature: gene Location: 90006-91493 bp Ori: BBQ92237.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90411-91101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904 11-91101 bp Feature: gene Location: 92046-92243 bp Feature: gene Location: 92252-92746 bp Feature: gene Location: 137378-137800 bp Ori: BBQ92287.1 Feature: domain Description: PRK10276 Location: 137384-137786 bp Feature: domain Description: PRK10276 Location: 137384 -137786 bp Feature: gene Location: 137868-139088 bp Ori: BBQ92288.1 Feature: domain Description: zf-ISL3 Location: 138000-138126 bp Feature: domain Description: zf-ISL3 Location: 138000-138126 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 138144-138291 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 13814 4 -138291 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 138342-139047 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 13834 2-13904 7 bp Feature: gene Location: 139532-141019 bp Ori: BBQ92289.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139937-140627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139937-14 0627 bp Feature: gene Location: 141387-142574 bp Ori: BBQ92290.1 Feature: domain Description: InsQ Location: 141402-142524 bp Feature: domain Description: InsQ Location: 14 14 02-14 2524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_HLTF1_SMARC3 (cd18071), HTH_28 (pfam13518), rve (pfam00665), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), InsQ (COG0675)