myRT

myRT report for GCA_014170945.1_ASM1417094v1

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Seq: CP059944.1 Escherichia coli strain 101.3 chromosome, complete genome (4634466 bp)
Overview 1 RT 1: 1862383-1866318 bp 2 RT 2: 1981279-1985670 bp 3 RT 3: 3680119-3686495 bp 4 RT 4: 4081005-4085670 bp Neighborhood of RT #1 [1862383, 1866318] Nuc_deoxyrib_tr RVT-Retrons Neighborhood of RT #2 [1981279, 1985741] Ogr_Delta PHA02517 RVT-GII GIIM InsE STALD Neighborhood of RT #3 [3680119, 3686515] XdhC RVT-UG8 RVT-UG3 PRK09678 Psu Neighborhood of RT #4 [4081005, 4085681] PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 1862383-1863252 bp Ori: QNC24684.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1862905-1863076 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 862905-1 863076 bp Feature: gene Location: 1863272-1863427 bp Feature: gene Location: 1863908-1864995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1864076-1864610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 864076-1 86461 0 bp Feature: gene Location: 1865123-1865386 bp Feature: gene Location: 1865485-1866318 bp Feature: gene Location: 1981279-1981539 bp Ori: QNC24777.1 Feature: domain Description: Ogr_Delta Location: 1981288-1981429 bp Feature: domain Description: Ogr_Delta Location: 1 981 288-1 981 429 bp Feature: gene Location: 1981653-1982141 bp Feature: domain Description: PHA02517 Location: 1981656-1982130 bp Feature: domain Description: PHA0251 7 Location: 1 981 656-1 9821 30 bp Feature: gene Location: 1982222-1983730 bp Ori: QNC25128.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982480-1983212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 982480-1 98321 2 bp Feature: domain Description: GIIM Note: maturase Location: 1983287-1983485 bp Feature: domain Description: GIIM Note: maturase Location: 1 983287-1 983485 bp Feature: gene Location: 1984403-1985091 bp Feature: domain Description: InsE Location: 1984412-1984697 bp Feature: domain Description: InsE Location: 1 98441 2-1 984697 bp Feature: gene Location: 1985100-1985741 bp Ori: QNC25129.1 Feature: domain Description: STALD Location: 1985166-1985670 bp Feature: domain Description: STALD Location: 1 9851 66-1 985670 bp Feature: gene Location: 3680119-3681075 bp Ori: QNC22431.1 Gene: paoD Feature: domain Description: XdhC Location: 3680197-3681052 bp Feature: domain Description: XdhC Location: 36801 97-3681 052 bp Feature: gene Location: 3681054-3681465 bp Feature: gene Location: 3682007-3684025 bp Ori: QNC22432.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3682580-3683033 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3682580-3683033 bp Feature: gene Location: 3684016-3685291 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3684304-3684799 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3684304-3684799 bp Feature: gene Location: 3685686-3685958 bp Ori: QNC22433.1 Feature: domain Description: PRK09678 Location: 3685695-3685860 bp Feature: domain Description: PRK09678 Location: 3685695-3685860 bp Feature: gene Location: 3685964-3686515 bp Ori: QNC22434.1 Feature: domain Description: Psu Location: 3685985-3686495 bp Feature: domain Description: Psu Location: 3685985-3686495 bp Feature: gene Location: 4081005-4081262 bp Feature: gene Location: 4081345-4081833 bp Feature: domain Description: PHA02517 Location: 4081348-4081813 bp Feature: domain Description: PHA0251 7 Location: 4081 348-4081 81 3 bp Feature: gene Location: 4081914-4083422 bp Ori: QNC25219.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4082172-4082904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40821 72-4082904 bp Feature: domain Description: GIIM Note: maturase Location: 4082979-4083177 bp Feature: domain Description: GIIM Note: maturase Location: 4082979-40831 77 bp Feature: gene Location: 4084095-4084520 bp Feature: domain Description: PHA02517 Location: 4084185-4084521 bp Feature: domain Description: PHA0251 7 Location: 40841 85-4084521 bp Feature: gene Location: 4084530-4085681 bp Ori: QNC22747.1 Feature: domain Description: HTH_38 Location: 4084539-4084653 bp Feature: domain Description: HTH_38 Location: 4084539-4084653 bp Feature: domain Description: Tra8 Location: 4084689-4085670 bp Feature: domain Description: Tra8 Location: 4084689-4085670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, Ogr_Delta (pfam04606), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), STALD (pfam18185), XdhC (COG1975), RVT-UG8
RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), HTH_38 (pfam13936), Tra8 (COG2826)