myRT

myRT report for GCA_014211935.1_ASM1421193v1

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Seq: CP060047.1 Vibrio vulnificus strain 2497-87 chromosome 1, complete sequence (3260230 bp)
Overview 1 RT 1: 1899500-1902314 bp 2 RT 2: 1955278-1961786 bp 3 RT 3: 2433938-2447235 bp 4 RT 4: 2558771-2563357 bp 5 RT 5: 2892091-2896927 bp Neighborhood of RT #1 [1899500, 1902367] RVT-GII GIIM HTH_29 HDOD Neighborhood of RT #2 [1955278, 1961800] bioH RVT-GII GIIM Tex greB Neighborhood of RT #3 [2433938, 2447483] RVT-Retrons COG5340 PinE RVT-UG2 DUF45 COG0610 Neighborhood of RT #4 [2558771, 2563581] PRK14325 PRK08849 RVT-GII GIIM Neighborhood of RT #5 [2892091, 2896929] HemolysinCabind HemolysinCabind HemolysinCabind PRK10700 RVT-GII GIIM YciU PRK04542 Feature: gene Location: 1899500-1900792 bp Ori: QNE02453.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1899698-1900307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 899698-1 900307 bp Feature: domain Description: GIIM Note: maturase Location: 1900364-1900568 bp Feature: domain Description: GIIM Note: maturase Location: 1 900364-1 900568 bp Feature: gene Location: 1900909-1901362 bp Feature: domain Description: HTH_29 Location: 1900981-1901158 bp Feature: domain Description: HTH_29 Location: 1 900981 -1 901 1 58 bp Feature: gene Location: 1901540-1902367 bp Ori: QND99771.1 Feature: domain Description: HDOD Location: 1901549-1902314 bp Feature: domain Description: HDOD Location: 1 901 549-1 90231 4 bp Feature: gene Location: 1955278-1956045 bp Ori: QND99819.1 Gene: bioH Feature: domain Description: bioH Location: 1955311-1956034 bp Feature: domain Description: bioH Location: 1 95531 1 -1 956034 bp Feature: gene Location: 1956183-1956653 bp Feature: gene Location: 1957280-1958572 bp Ori: QNE02455.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957478-1958087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 957478-1 958087 bp Feature: domain Description: GIIM Note: maturase Location: 1958144-1958348 bp Feature: domain Description: GIIM Note: maturase Location: 1 9581 44-1 958348 bp Feature: gene Location: 1958758-1961082 bp Ori: QND99821.1 Feature: domain Description: Tex Location: 1958761-1961068 bp Feature: domain Description: Tex Location: 1 958761 -1 961 068 bp Feature: gene Location: 1961318-1961800 bp Ori: QND99822.1 Gene: greB Feature: domain Description: greB Location: 1961324-1961786 bp Feature: domain Description: greB Location: 1 961 324-1 961 786 bp Feature: gene Location: 2433938-2434270 bp Feature: gene Location: 2434681-2435556 bp Feature: gene Location: 2436250-2437107 bp Ori: QNE02468.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2436292-2436841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2436292-2436841 bp Feature: gene Location: 2437349-2437888 bp Ori: QNE00229.1 Feature: domain Description: COG5340 Location: 2437481-2437712 bp Feature: domain Description: COG5340 Location: 2437481 -243771 2 bp Feature: gene Location: 2438581-2438868 bp Feature: gene Location: 2439502-2440092 bp Ori: QNE02469.1 Feature: domain Description: PinE Location: 2439511-2440072 bp Feature: domain Description: PinE Location: 243951 1 -2440072 bp Feature: gene Location: 2440296-2441267 bp Feature: gene Location: 2441427-2442737 bp Ori: QNE00232.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2441628-2442441 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2441 628-2442441 bp Feature: gene Location: 2443379-2444080 bp Ori: QNE00233.1 Feature: domain Description: DUF45 Location: 2443451-2444060 bp Feature: domain Description: DUF45 Location: 2443451 -2444060 bp Feature: gene Location: 2444112-2447483 bp Ori: QNE00234.1 Feature: domain Description: COG0610 Location: 2444157-2447235 bp Feature: domain Description: COG061 0 Location: 24441 57-2447235 bp Feature: gene Location: 2558771-2560195 bp Ori: QNE00338.1 Gene: miaB Feature: domain Description: PRK14325 Location: 2558774-2560103 bp Feature: domain Description: PRK1 4325 Location: 2558774-25601 03 bp Feature: gene Location: 2560502-2561650 bp Ori: QNE00339.1 Feature: domain Description: PRK08849 Location: 2560505-2561648 bp Feature: domain Description: PRK08849 Location: 2560505-2561 648 bp Feature: gene Location: 2562289-2563581 bp Ori: QNE02471.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2562487-2563096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2562487-2563096 bp Feature: domain Description: GIIM Note: maturase Location: 2563153-2563357 bp Feature: domain Description: GIIM Note: maturase Location: 25631 53-2563357 bp Feature: gene Location: 2892091-2892801 bp Ori: QNE00614.1 Feature: domain Description: HemolysinCabind Location: 2892175-2892241 bp Feature: domain Description: HemolysinCabind Location: 28921 75-2892241 bp Feature: domain Description: HemolysinCabind Location: 2892244-2892349 bp Feature: domain Description: HemolysinCabind Location: 2892244-2892349 bp Feature: domain Description: HemolysinCabind Location: 2892409-2892484 bp Feature: domain Description: HemolysinCabind Location: 2892409-2892484 bp Feature: gene Location: 2893137-2894099 bp Ori: QNE00615.1 Gene: rluB Feature: domain Description: PRK10700 Location: 2893140-2893992 bp Feature: domain Description: PRK1 0700 Location: 28931 40-2893992 bp Feature: gene Location: 2894710-2896002 bp Ori: QNE02485.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2894908-2895520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2894908-2895520 bp Feature: domain Description: GIIM Note: maturase Location: 2895574-2895778 bp Feature: domain Description: GIIM Note: maturase Location: 2895574-2895778 bp Feature: gene Location: 2896040-2896360 bp Ori: QNE00616.1 Feature: domain Description: YciU Location: 2896055-2896355 bp Feature: domain Description: YciU Location: 2896055-2896355 bp Feature: gene Location: 2896363-2896929 bp Ori: QNE00617.1 Gene: yeiP Feature: domain Description: PRK04542 Location: 2896366-2896927 bp Feature: domain Description: PRK04542 Location: 2896366-2896927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HDOD (pfam08668), bioH (TIGR01738), Tex (COG2183), greB (TIGR01461), RVT-Retrons, COG5340 (Transcriptional regulator, predicted component of viral defense system ), PinE (COG1961)
RVT-UG2, DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), PRK14325 ((dimethylallyl)adenosine tRNA methylthiotransferase; Provisional), PRK08849 (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional), HemolysinCabind (pfam00353), PRK10700 (23S rRNA pseudouridine(2605) synthase RluB), YciU (COG3099), PRK04542 (elongation factor P; Provisional)

Seq: CP060048.1 Vibrio vulnificus strain 2497-87 chromosome 2, complete sequence (1772589 bp)
Overview 1 RT 1: 256273-261737 bp 2 RT 2: 1117989-1123506 bp 3 RT 3: 1764398-1772236 bp Neighborhood of RT #1 [256273, 261737] TraF_2 UPF0181 RVT-GII GIIM PHA01082 Neighborhood of RT #2 [1117989, 1123604] DUF3081 nagB RVT-GII GIIM ANT ANT Glt_symporter Neighborhood of RT #3 [1764398, 1772236] TDT_C4-dicarb_trans PRK05277 RVT-GII GIIM vWFA Feature: gene Location: 256273-257385 bp Ori: QNE03366.1 Feature: domain Description: TraF_2 Location: 256411-257134 bp Feature: domain Description: TraF_2 Location: 2 56411-2 57134 bp Feature: gene Location: 257430-257585 bp Ori: QNE03367.1 Feature: domain Description: UPF0181 Location: 257433-257577 bp Feature: domain Description: UPF0181 Location: 2 57433-2 57577 bp Feature: gene Location: 258211-259503 bp Ori: QNE03863.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258409-259018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58409-2 59018 bp Feature: domain Description: GIIM Note: maturase Location: 259075-259279 bp Feature: domain Description: GIIM Note: maturase Location: 2 59075-2 592 79 bp Feature: gene Location: 260661-261032 bp Ori: QNE03864.1 Feature: domain Description: PHA01082 Location: 260664-261024 bp Feature: domain Description: PHA01082 Location: 2 60664-2 6102 4 bp Feature: gene Location: 261054-261737 bp Feature: gene Location: 1117989-1118240 bp Ori: QNE02661.1 Feature: domain Description: DUF3081 Location: 1118004-1118232 bp Feature: domain Description: DUF3081 Location: 1118004-11182 32 bp Feature: gene Location: 1118562-1119362 bp Ori: QNE02662.1 Feature: domain Description: nagB Location: 1118565-1119339 bp Feature: domain Description: nagB Location: 1118565-1119339 bp Feature: gene Location: 1119422-1120714 bp Ori: QNE03887.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119620-1120229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111962 0-112 02 2 9 bp Feature: domain Description: GIIM Note: maturase Location: 1120286-1120490 bp Feature: domain Description: GIIM Note: maturase Location: 112 02 86-112 0490 bp Feature: gene Location: 1121356-1122222 bp Ori: QNE02663.1 Feature: domain Description: ANT Location: 1121362-1121479 bp Feature: domain Description: ANT Location: 112 1362 -112 1479 bp Feature: domain Description: ANT Location: 1121584-1121701 bp Feature: domain Description: ANT Location: 112 1584-112 1701 bp Feature: gene Location: 1122378-1123604 bp Ori: QNE02664.1 Gene: gltS Feature: domain Description: Glt_symporter Location: 1122408-1123506 bp Feature: domain Description: Glt_symporter Location: 112 2 408-112 3506 bp Feature: gene Location: 1764398-1765372 bp Ori: QNE03169.1 Feature: domain Description: TDT_C4-dicarb_trans Location: 1764446-1765328 bp Feature: domain Description: TDT_C4-dicarb_trans Location: 1764446-176532 8 bp Feature: gene Location: 1765616-1767019 bp Ori: QNE03170.1 Gene: clcA Feature: domain Description: PRK05277 Location: 1765718-1767011 bp Feature: domain Description: PRK052 77 Location: 1765718-1767011 bp Feature: gene Location: 1767947-1769239 bp Ori: QNE03912.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768145-1768754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768145-1768754 bp Feature: domain Description: GIIM Note: maturase Location: 1768811-1769015 bp Feature: domain Description: GIIM Note: maturase Location: 1768811-1769015 bp Feature: gene Location: 1769275-1771446 bp Ori: QNE03171.1 Feature: domain Description: vWFA Location: 1770691-1771156 bp Feature: domain Description: vWFA Location: 1770691-1771156 bp Feature: gene Location: 1771619-1772236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraF_2 (pfam13729), UPF0181 (pfam03701), RVT-GII, GIIM (pfam08388), PHA01082 (putative transcription regulator), DUF3081 (pfam11280), nagB (TIGR00502), ANT (pfam03374), Glt_symporter (pfam03616), TDT_C4-dicarb_trans (cd09325)
PRK05277 (H(+)/Cl(-) exchange transporter ClcA), vWFA (cl00057)