myRT

myRT report for GCA_014217155.1_ASM1421715v1

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Seq: CP051616.1 Escherichia coli O25b:H4-ST131 strain 2017_APHA plasmid pAPHA_2017_1, complete sequence (134872 bp)
Overview 1 RT 1: 12942-17099 bp 2 RT 2: 26761-30189 bp Neighborhood of RT #1 [12942, 17099] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [26761, 30413] InsE RVT-GII PRK10173 Sigma70_r4_2 Sigma70_r4_2 Feature: gene Location: 12942-13346 bp Ori: QNE99961.1 Feature: domain Description: InsE Location: 12972-13308 bp Feature: domain Description: InsE Location: 1 2972-1 3308 bp Feature: gene Location: 13375-13758 bp Feature: domain Description: PHA02517 Location: 13381-13714 bp Feature: domain Description: PHA0251 7 Location: 1 3381 -1 371 4 bp Feature: gene Location: 13848-15356 bp Ori: QNF00065.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14106-14838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 06-1 4838 bp Feature: domain Description: GIIM Note: maturase Location: 14913-15111 bp Feature: domain Description: GIIM Note: maturase Location: 1 491 3-1 51 1 1 bp Feature: gene Location: 16029-16768 bp Feature: domain Description: InsE Location: 16032-16368 bp Feature: domain Description: InsE Location: 1 6032-1 6368 bp Feature: gene Location: 16794-17099 bp Feature: gene Location: 26761-27021 bp Feature: gene Location: 27123-27862 bp Feature: domain Description: InsE Location: 27126-27462 bp Feature: domain Description: InsE Location: 271 26-27462 bp Feature: gene Location: 28535-29023 bp Ori: QNF00066.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28793-28865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28793-28865 bp Feature: gene Location: 29173-29806 bp Feature: domain Description: PRK10173 Location: 29176-29614 bp Feature: domain Description: PRK1 01 73 Location: 291 76-2961 4 bp Feature: gene Location: 29928-30413 bp Ori: QNE99970.1 Feature: domain Description: Sigma70_r4_2 Location: 29988-30060 bp Feature: domain Description: Sigma70_r4_2 Location: 29988-30060 bp Feature: domain Description: Sigma70_r4_2 Location: 30129-30189 bp Feature: domain Description: Sigma70_r4_2 Location: 301 29-301 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), Sigma70_r4_2 (pfam08281)

Seq: CP051615.1 Escherichia coli O25b:H4-ST131 strain 2017_APHA chromosome, complete genome (4988271 bp)
Overview 1 RT 1: 4871695-4878558 bp Neighborhood of RT #1 [4871695, 4878558] PRK11388 RVT-Retrons Feature: gene Location: 4871695-4873623 bp Ori: QNE99644.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 4871707-4873615 bp Feature: domain Description: PRK11388 Location: 4871707-4873615 bp Feature: gene Location: 4873660-4873890 bp Feature: gene Location: 4874915-4876672 bp Ori: QNE99646.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4875059-4875677 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4875059-4875677 bp Feature: gene Location: 4876919-4878046 bp Feature: gene Location: 4878043-4878558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons