myRT

myRT report for GCA_014217295.1_ASM1421729v1

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Seq: CP060087.1 Vibrio parahaemolyticus strain TJA114 chromosome 1, complete sequence (1810082 bp)
Overview 1 RT 1: 548042-554911 bp 2 RT 2: 983269-989274 bp 3 RT 3: 1125075-1134104 bp Neighborhood of RT #1 [548042, 555693] RVT_N RVT-GII GIIM Peptidases_S8_Thermitase_like Peptidases_S8_Thermitase_like INPP5c Neighborhood of RT #2 [983269, 989315] YjcZ Pat_hypo_Ecoli_Z1214_like RVT_N RVT-GII GIIM umuC PRK10276 Neighborhood of RT #3 [1125075, 1134166] PRK01202 PRK05367 RVT_N RVT-GII GIIM Mrr_cat AAA_13 Feature: gene Location: 548042-548701 bp Feature: gene Location: 548801-549529 bp Feature: gene Location: 550326-551798 bp Ori: QNE55838.1 Gene: ltrA Feature: domain Description: RVT_N Location: 550374-550617 bp Feature: domain Description: RVT_N Location: 550374-55061 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550662-551289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550662-551 289 bp Feature: domain Description: GIIM Note: maturase Location: 551349-551574 bp Feature: domain Description: GIIM Note: maturase Location: 551 349-551 574 bp Feature: gene Location: 552204-554108 bp Ori: QNE55534.1 Feature: domain Description: Peptidases_S8_Thermitase_like Location: 552723-552999 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 552723-552999 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 553092-553554 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 553092-553554 bp Feature: gene Location: 554200-555693 bp Ori: QNE55535.1 Feature: domain Description: INPP5c Location: 554488-554911 bp Feature: domain Description: INPP5c Location: 554488-55491 1 bp Feature: gene Location: 983269-984141 bp Ori: QNE54382.1 Feature: domain Description: YjcZ Location: 983329-984124 bp Feature: domain Description: YjcZ Location: 983329-9841 24 bp Feature: gene Location: 984138-985211 bp Ori: QNE54383.1 Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 984153-985065 bp Feature: domain Description: Pat_hypo_Ecoli_Z1 21 4_like Location: 9841 53-985065 bp Feature: gene Location: 986009-987481 bp Ori: QNE55851.1 Gene: ltrA Feature: domain Description: RVT_N Location: 986057-986300 bp Feature: domain Description: RVT_N Location: 986057-986300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986345-986972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986345-986972 bp Feature: domain Description: GIIM Note: maturase Location: 987032-987257 bp Feature: domain Description: GIIM Note: maturase Location: 987032-987257 bp Feature: gene Location: 987646-988902 bp Ori: QNE54384.1 Feature: domain Description: umuC Location: 987649-988897 bp Feature: domain Description: umuC Location: 987649-988897 bp Feature: gene Location: 988902-989315 bp Ori: QNE54385.1 Feature: domain Description: PRK10276 Location: 988917-989274 bp Feature: domain Description: PRK1 0276 Location: 98891 7-989274 bp Feature: gene Location: 1125075-1125455 bp Ori: QNE54499.1 Gene: gcvH Feature: domain Description: PRK01202 Location: 1125081-1125447 bp Feature: domain Description: PRK01 202 Location: 1 1 25081 -1 1 25447 bp Feature: gene Location: 1125584-1128448 bp Ori: QNE54500.1 Gene: gcvP Feature: domain Description: PRK05367 Location: 1125605-1128443 bp Feature: domain Description: PRK05367 Location: 1 1 25605-1 1 28443 bp Feature: gene Location: 1128639-1130111 bp Ori: QNE55855.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1128687-1128930 bp Feature: domain Description: RVT_N Location: 1 1 28687-1 1 28930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128975-1129602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 28975-1 1 29602 bp Feature: domain Description: GIIM Note: maturase Location: 1129662-1129887 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 29662-1 1 29887 bp Feature: gene Location: 1130768-1131781 bp Ori: QNE54501.1 Feature: domain Description: Mrr_cat Location: 1131401-1131740 bp Feature: domain Description: Mrr_cat Location: 1 1 31 401 -1 1 31 740 bp Feature: gene Location: 1131848-1134166 bp Ori: QNE54502.1 Feature: domain Description: AAA_13 Location: 1131890-1134104 bp Feature: domain Description: AAA_1 3 Location: 1 1 31 890-1 1 341 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Peptidases_S8_Thermitase_like (cd07484), INPP5c (cd09074), YjcZ (pfam13990), Pat_hypo_Ecoli_Z1214_like (cd07209), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK01202 (glycine cleavage system protein GcvH)
PRK05367 (aminomethyl-transferring glycine dehydrogenase), Mrr_cat (pfam04471), AAA_13 (pfam13166)