myRT

myRT report for GCA_014235165.1_ASM1423516v1

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Seq: CP060122.1 Sphingobium yanoikuyae strain A3 chromosome, complete genome (6531504 bp)
Overview 1 RT 1: 630545-635159 bp 2 RT 2: 837413-842213 bp 3 RT 3: 2592304-2598447 bp 4 RT 4: 5569888-5577822 bp 5 RT 5: 5580376-5586337 bp 6 RT 6: 6352072-6358676 bp Neighborhood of RT #1 [630545, 635281] ERG3 HipB RVT-Retrons PRK11899 Cyc7 Neighborhood of RT #2 [837413, 842213] RVT-Retrons Trypsin_2 Neighborhood of RT #3 [2592304, 2598452] InsE RVT-GII GIIM PHA02517 PRK13889 Neighborhood of RT #4 [5569888, 5577822] PRK10026 HTH_ARSR RVT-GII GIIM ligand_gated_channel Neighborhood of RT #5 [5580376, 5587065] KDGDH RVT-GII GIIM PRK09692 rve Neighborhood of RT #6 [6352072, 6358735] NhaP IS285 RVT-GII GIIM PRiA4_ORF3 COG3547 Feature: gene Location: 630545-631285 bp Ori: QNG46657.1 Feature: domain Description: ERG3 Location: 630698-631238 bp Feature: domain Description: ERG3 Location: 630698-631 238 bp Feature: gene Location: 631983-632285 bp Ori: QNG46658.1 Feature: domain Description: HipB Location: 631986-632199 bp Feature: domain Description: HipB Location: 631 986-6321 99 bp Feature: gene Location: 632290-633192 bp Ori: QNG46659.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 632485-632992 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 632485-632992 bp Feature: gene Location: 633595-634485 bp Ori: QNG46660.1 Feature: domain Description: PRK11899 Location: 633664-634480 bp Feature: domain Description: PRK1 1 899 Location: 633664-634480 bp Feature: gene Location: 634658-635281 bp Ori: QNG46661.1 Feature: domain Description: Cyc7 Location: 634850-635159 bp Feature: domain Description: Cyc7 Location: 634850-6351 59 bp Feature: gene Location: 837413-838378 bp Feature: gene Location: 838486-838776 bp Feature: gene Location: 839431-840873 bp Ori: QNG48867.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 839452-840052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 839452-840052 bp Feature: domain Description: Trypsin_2 Location: 840397-840799 bp Feature: domain Description: Trypsin_2 Location: 840397-840799 bp Feature: gene Location: 841290-841559 bp Feature: gene Location: 841644-842213 bp Feature: gene Location: 2592304-2592567 bp Feature: gene Location: 2592830-2593575 bp Feature: domain Description: InsE Location: 2592836-2593154 bp Feature: domain Description: InsE Location: 2592836-25931 54 bp Feature: gene Location: 2594227-2595741 bp Ori: QNG48325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2594485-2595220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2594485-2595220 bp Feature: domain Description: GIIM Note: maturase Location: 2595292-2595520 bp Feature: domain Description: GIIM Note: maturase Location: 2595292-2595520 bp Feature: gene Location: 2595809-2596300 bp Feature: domain Description: PHA02517 Location: 2595818-2596298 bp Feature: domain Description: PHA0251 7 Location: 259581 8-2596298 bp Feature: gene Location: 2596338-2598452 bp Gene: traA Feature: domain Description: PRK13889 Location: 2596341-2598447 bp Feature: domain Description: PRK1 3889 Location: 2596341 -2598447 bp Feature: gene Location: 5569888-5570301 bp Ori: QNG45342.1 Gene: arsC Feature: domain Description: PRK10026 Location: 5569891-5570284 bp Feature: domain Description: PRK1 0026 Location: 5569891 -5570284 bp Feature: gene Location: 5570312-5570641 bp Ori: QNG45343.1 Feature: domain Description: HTH_ARSR Location: 5570342-5570543 bp Feature: domain Description: HTH_ARSR Location: 5570342-5570543 bp Feature: gene Location: 5571339-5572661 bp Ori: QNG45344.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5571630-5572293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5571 630-5572293 bp Feature: domain Description: GIIM Note: maturase Location: 5572365-5572578 bp Feature: domain Description: GIIM Note: maturase Location: 5572365-5572578 bp Feature: gene Location: 5572866-5575685 bp Ori: QNG45345.1 Feature: domain Description: ligand_gated_channel Location: 5573085-5575680 bp Feature: domain Description: ligand_gated_channel Location: 5573085-5575680 bp Feature: gene Location: 5575870-5577822 bp Feature: gene Location: 5580376-5581293 bp Ori: QNG45348.1 Gene: kdgD Feature: domain Description: KDGDH Location: 5580421-5581279 bp Feature: domain Description: KDGDH Location: 5580421 -5581 279 bp Feature: gene Location: 5581390-5581605 bp Feature: gene Location: 5582059-5583381 bp Ori: QNG45350.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5582350-5583013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5582350-558301 3 bp Feature: domain Description: GIIM Note: maturase Location: 5583085-5583298 bp Feature: domain Description: GIIM Note: maturase Location: 5583085-5583298 bp Feature: gene Location: 5583948-5585231 bp Ori: QNG45351.1 Feature: domain Description: PRK09692 Location: 5583954-5585112 bp Feature: domain Description: PRK09692 Location: 5583954-55851 1 2 bp Feature: gene Location: 5585602-5587065 bp Ori: QNG45352.1 Feature: domain Description: rve Location: 5585941-5586337 bp Feature: domain Description: rve Location: 5585941 -5586337 bp Feature: gene Location: 6352072-6353338 bp Feature: domain Description: NhaP Location: 6352111-6352618 bp Feature: domain Description: NhaP Location: 63521 1 1 -635261 8 bp Feature: gene Location: 6353465-6354688 bp Ori: QNG45973.1 Feature: domain Description: IS285 Location: 6353501-6354668 bp Feature: domain Description: IS285 Location: 6353501 -6354668 bp Feature: gene Location: 6354821-6356143 bp Ori: QNG45974.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6355112-6355775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63551 1 2-6355775 bp Feature: domain Description: GIIM Note: maturase Location: 6355847-6356060 bp Feature: domain Description: GIIM Note: maturase Location: 6355847-6356060 bp Feature: gene Location: 6356770-6357339 bp Ori: QNG49306.1 Feature: domain Description: PRiA4_ORF3 Location: 6356773-6357259 bp Feature: domain Description: PRiA4_ORF3 Location: 6356773-6357259 bp Feature: gene Location: 6357692-6358735 bp Ori: QNG45975.1 Feature: domain Description: COG3547 Location: 6357707-6358676 bp Feature: domain Description: COG3547 Location: 6357707-6358676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ERG3 (COG3000), HipB (COG1396), RVT-Retrons, PRK11899 (prephenate dehydratase; Provisional), Cyc7 (COG3474), Trypsin_2 (pfam13365), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)
PRK13889 (conjugal transfer relaxase TraA; Provisional), PRK10026 (arsenate reductase (glutaredoxin)), HTH_ARSR (smart00418), ligand_gated_channel (cd01347), KDGDH (cd00951), PRK09692 (Integrase; provisional), rve (pfam00665), NhaP (COG0025), IS285 (COG3328), PRiA4_ORF3 (pfam07929)
COG3547 (Transposase )