myRT

myRT report for GCA_014236775.1_ASM1423677v1

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Seq: CP028361.1 Clostridioides difficile strain DSM 105001 chromosome, complete genome (4198599 bp)
Overview 1 RT 1: 2130280-2136071 bp 2 RT 2: 2524075-2529398 bp 3 RT 3: 2535459-2540302 bp 4 RT 4: 3854958-3862903 bp Neighborhood of RT #1 [2130280, 2136124] DUF3788 Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC Hydrolase_4 Neighborhood of RT #2 [2524075, 2529398] Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc PldB Hydrolase_4 Neighborhood of RT #3 [2535459, 2540343] Lysozyme_like Spr RVT-GII Intron_maturas2 HNHc TpcC DUF2089 Neighborhood of RT #4 [3854958, 3862903] P-type_ATPase_Mg TpcC RVT-GII Intron_maturas2 HNHc Lysozyme_like Spr Feature: gene Location: 2130280-2130714 bp Ori: QNG65048.1 Feature: domain Description: DUF3788 Location: 2130310-2130688 bp Feature: domain Description: DUF3788 Location: 21 3031 0-21 30688 bp Feature: gene Location: 2131161-2131880 bp Ori: QNG65049.1 Feature: domain Description: Lysozyme_like Location: 2131185-2131557 bp Feature: domain Description: Lysozyme_like Location: 21 31 1 85-21 31 557 bp Feature: domain Description: Spr Location: 2131590-2131863 bp Feature: domain Description: Spr Location: 21 31 590-21 31 863 bp Feature: gene Location: 2132501-2134297 bp Ori: QNG65050.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132768-2133578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 32768-21 33578 bp Feature: domain Description: Intron_maturas2 Location: 2133644-2133983 bp Feature: domain Description: Intron_maturas2 Location: 21 33644-21 33983 bp Feature: domain Description: HNHc Note: nucleases Location: 2134115-2134271 bp Feature: domain Description: HNHc Note: nucleases Location: 21 341 1 5-21 34271 bp Feature: gene Location: 2134398-2135054 bp Ori: QNG65051.1 Feature: domain Description: TpcC Location: 2134434-2135046 bp Feature: domain Description: TpcC Location: 21 34434-21 35046 bp Feature: gene Location: 2135267-2136124 bp Ori: QNG65052.1 Feature: domain Description: Hydrolase_4 Location: 2135345-2136071 bp Feature: domain Description: Hydrolase_4 Location: 21 35345-21 36071 bp Feature: gene Location: 2524075-2525196 bp Ori: QNG65410.1 Feature: domain Description: Rol_Rep_N Location: 2524204-2524465 bp Feature: domain Description: Rol_Rep_N Location: 2524204-2524465 bp Feature: domain Description: Rep_trans Location: 2524489-2525104 bp Feature: domain Description: Rep_trans Location: 2524489-25251 04 bp Feature: gene Location: 2525204-2525338 bp Ori: QNG65411.1 Feature: domain Description: DUF3789 Location: 2525216-2525309 bp Feature: domain Description: DUF3789 Location: 252521 6-2525309 bp Feature: gene Location: 2526080-2527990 bp Ori: QNG65412.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2526413-2527151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252641 3-25271 51 bp Feature: domain Description: HNHc Note: nucleases Location: 2527706-2527871 bp Feature: domain Description: HNHc Note: nucleases Location: 2527706-2527871 bp Feature: gene Location: 2528403-2529005 bp Ori: QNG65413.1 Feature: domain Description: PldB Location: 2528571-2528688 bp Feature: domain Description: PldB Location: 2528571 -2528688 bp Feature: domain Description: Hydrolase_4 Location: 2528688-2528961 bp Feature: domain Description: Hydrolase_4 Location: 2528688-2528961 bp Feature: gene Location: 2529102-2529398 bp Feature: gene Location: 2535459-2536391 bp Ori: QNG65420.1 Feature: domain Description: Lysozyme_like Location: 2535606-2536068 bp Feature: domain Description: Lysozyme_like Location: 2535606-2536068 bp Feature: domain Description: Spr Location: 2536101-2536374 bp Feature: domain Description: Spr Location: 25361 01 -2536374 bp Feature: gene Location: 2537012-2538808 bp Ori: QNG65421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537279-2538089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537279-2538089 bp Feature: domain Description: Intron_maturas2 Location: 2538155-2538494 bp Feature: domain Description: Intron_maturas2 Location: 25381 55-2538494 bp Feature: domain Description: HNHc Note: nucleases Location: 2538626-2538782 bp Feature: domain Description: HNHc Note: nucleases Location: 2538626-2538782 bp Feature: gene Location: 2539053-2539958 bp Ori: QNG65422.1 Feature: domain Description: TpcC Location: 2539278-2539950 bp Feature: domain Description: TpcC Location: 2539278-2539950 bp Feature: gene Location: 2540047-2540343 bp Ori: QNG65423.1 Feature: domain Description: DUF2089 Location: 2540074-2540302 bp Feature: domain Description: DUF2089 Location: 2540074-2540302 bp Feature: gene Location: 3854958-3857621 bp Ori: QNG66522.1 Gene: mgtA Feature: domain Description: P-type_ATPase_Mg Location: 3855054-3857406 bp Feature: domain Description: P-type_ATPase_Mg Location: 3855054-3857406 bp Feature: gene Location: 3858407-3859309 bp Ori: QNG66523.1 Feature: domain Description: TpcC Location: 3858632-3859301 bp Feature: domain Description: TpcC Location: 3858632-3859301 bp Feature: gene Location: 3859554-3861350 bp Ori: QNG66524.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3859821-3860631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3859821 -3860631 bp Feature: domain Description: Intron_maturas2 Location: 3860697-3861036 bp Feature: domain Description: Intron_maturas2 Location: 3860697-3861 036 bp Feature: domain Description: HNHc Note: nucleases Location: 3861168-3861324 bp Feature: domain Description: HNHc Note: nucleases Location: 3861 1 68-3861 324 bp Feature: gene Location: 3861971-3862903 bp Ori: QNG66525.1 Feature: domain Description: Lysozyme_like Location: 3862118-3862580 bp Feature: domain Description: Lysozyme_like Location: 38621 1 8-3862580 bp Feature: domain Description: Spr Location: 3862613-3862886 bp Feature: domain Description: Spr Location: 386261 3-3862886 bp Feature: gene Location: 3862874-3862903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3788 (pfam12663), Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TpcC (pfam12642), Hydrolase_4 (pfam12146), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)
DUF3789 (pfam12664), PldB (COG2267), DUF2089 (pfam09862), P-type_ATPase_Mg (cd02077)