myRT

myRT report for GCA_014302295.1_ASM1430229v1

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Seq: CP060287.1 Sporosarcina sp. resist chromosome, complete genome (5090475 bp)
Overview 1 RT 1: 132023-136487 bp 2 RT 2: 987813-997141 bp 3 RT 3: 1073457-1078192 bp 4 RT 4: 1866919-1871916 bp 5 RT 5: 1967488-1973430 bp 6 RT 6: 2716622-2721838 bp 7 RT 7: 2738274-2742073 bp 8 RT 8: 3742974-3746913 bp Neighborhood of RT #1 [132023, 136487] HTH_45 RVT-Retrons Neighborhood of RT #2 [987813, 997152] phage_arpU Cyt_C5_DNA_methylase Cyt_C5_DNA_methylase RVT-GII HNHc PDC1_MCP_like Tar GatA Neighborhood of RT #3 [1073457, 1078203] DedA RVT-GII OmpR HK_WalK PRK11360 Neighborhood of RT #4 [1866919, 1871916] xerS INT_RitA_C_like RVT-CRISPR-like GIIM GIIM Neighborhood of RT #5 [1967488, 1973432] LolD YloV RVT-GII HNHc YloV DegV COG3752 Neighborhood of RT #6 [2716622, 2721838] MFS_MefA_like RVT-GII RVT-GII HTH_36 Neighborhood of RT #7 [2738274, 2742129] RVT-GII HNHc Nudix_Hydrolase_39 Neighborhood of RT #8 [3742974, 3746913] SLH RVT-GII SLH Feature: gene Location: 132023-133030 bp Feature: gene Location: 133030-133371 bp Ori: QNK88340.1 Feature: domain Description: HTH_45 Location: 133108-133246 bp Feature: domain Description: HTH_45 Location: 1 331 08-1 33246 bp Feature: gene Location: 133575-134588 bp Ori: QNK88341.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133794-134346 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 33794-1 34346 bp Feature: gene Location: 134900-135358 bp Feature: gene Location: 135759-136487 bp Feature: gene Location: 987813-988307 bp Ori: QNK89069.1 Feature: domain Description: phage_arpU Location: 987936-988266 bp Feature: domain Description: phage_arpU Location: 987936-988266 bp Feature: gene Location: 989115-990020 bp Ori: QNK89070.1 Feature: domain Description: Cyt_C5_DNA_methylase Location: 989124-989445 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 9891 24-989445 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 989445-989955 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 989445-989955 bp Feature: gene Location: 991266-993251 bp Ori: QNK89071.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 991590-992313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 991 590-99231 3 bp Feature: domain Description: HNHc Note: nucleases Location: 992928-993075 bp Feature: domain Description: HNHc Note: nucleases Location: 992928-993075 bp Feature: gene Location: 994137-996188 bp Ori: QNK89072.1 Feature: domain Description: PDC1_MCP_like Location: 994446-994752 bp Feature: domain Description: PDC1 _MCP_like Location: 994446-994752 bp Feature: domain Description: Tar Location: 994941-996186 bp Feature: domain Description: Tar Location: 994941 -9961 86 bp Feature: gene Location: 996319-997152 bp Ori: QNK89073.1 Feature: domain Description: GatA Location: 996430-997141 bp Feature: domain Description: GatA Location: 996430-9971 41 bp Feature: gene Location: 1073457-1073945 bp Ori: QNK89143.1 Feature: domain Description: DedA Location: 1073469-1073931 bp Feature: domain Description: DedA Location: 1 073469-1 073931 bp Feature: gene Location: 1074815-1074985 bp Feature: gene Location: 1075131-1075586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075329-1075584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 075329-1 075584 bp Feature: gene Location: 1076165-1076839 bp Ori: QNK89144.1 Feature: domain Description: OmpR Location: 1076174-1076828 bp Feature: domain Description: OmpR Location: 1 0761 74-1 076828 bp Feature: gene Location: 1076836-1078203 bp Ori: QNK89145.1 Feature: domain Description: HK_WalK Location: 1077331-1077514 bp Feature: domain Description: HK_WalK Location: 1 077331 -1 07751 4 bp Feature: domain Description: PRK11360 Location: 1077535-1078192 bp Feature: domain Description: PRK1 1 360 Location: 1 077535-1 0781 92 bp Feature: gene Location: 1866919-1867687 bp Feature: gene Location: 1867680-1868915 bp Ori: QNK89829.1 Feature: domain Description: xerS Location: 1868034-1868157 bp Feature: domain Description: xerS Location: 1 868034-1 8681 57 bp Feature: domain Description: INT_RitA_C_like Location: 1868349-1868886 bp Feature: domain Description: INT_RitA_C_like Location: 1 868349-1 868886 bp Feature: gene Location: 1868944-1869762 bp Ori: QNK90526.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1868947-1869175 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 868947-1 8691 75 bp Feature: domain Description: GIIM Note: maturase Location: 1869253-1869373 bp Feature: domain Description: GIIM Note: maturase Location: 1 869253-1 869373 bp Feature: domain Description: GIIM Note: maturase Location: 1869439-1869523 bp Feature: domain Description: GIIM Note: maturase Location: 1 869439-1 869523 bp Feature: gene Location: 1870352-1870591 bp Feature: gene Location: 1870855-1871916 bp Feature: gene Location: 1967488-1968159 bp Ori: QNK90531.1 Feature: domain Description: LolD Location: 1967500-1968151 bp Feature: domain Description: LolD Location: 1 967500-1 9681 51 bp Feature: gene Location: 1968254-1968949 bp Ori: QNK89908.1 Feature: domain Description: YloV Location: 1968266-1968887 bp Feature: domain Description: YloV Location: 1 968266-1 968887 bp Feature: gene Location: 1969628-1971424 bp Ori: QNK89909.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969922-1970618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969922-1 97061 8 bp Feature: domain Description: HNHc Note: nucleases Location: 1971179-1971311 bp Feature: domain Description: HNHc Note: nucleases Location: 1 971 1 79-1 971 31 1 bp Feature: gene Location: 1971491-1972645 bp Ori: QNK89910.1 Feature: domain Description: YloV Location: 1971536-1971797 bp Feature: domain Description: YloV Location: 1 971 536-1 971 797 bp Feature: domain Description: DegV Location: 1971803-1972631 bp Feature: domain Description: DegV Location: 1 971 803-1 972631 bp Feature: gene Location: 1972659-1973432 bp Ori: QNK89911.1 Feature: domain Description: COG3752 Location: 1972674-1973430 bp Feature: domain Description: COG3752 Location: 1 972674-1 973430 bp Feature: gene Location: 2716622-2716786 bp Feature: gene Location: 2717071-2718297 bp Ori: QNK86234.1 Feature: domain Description: MFS_MefA_like Location: 2717101-2718232 bp Feature: domain Description: MFS_MefA_like Location: 271 71 01 -271 8232 bp Feature: gene Location: 2719199-2719915 bp Ori: QNK86235.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2719493-2719655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 9493-271 9655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2719658-2719787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 9658-271 9787 bp Feature: gene Location: 2720611-2721465 bp Feature: domain Description: HTH_36 Location: 2720710-2720869 bp Feature: domain Description: HTH_36 Location: 272071 0-2720869 bp Feature: gene Location: 2721599-2721838 bp Feature: gene Location: 2738274-2738660 bp Feature: gene Location: 2738664-2738750 bp Feature: gene Location: 2738763-2740559 bp Ori: QNK86256.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739057-2739753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739057-2739753 bp Feature: domain Description: HNHc Note: nucleases Location: 2740314-2740446 bp Feature: domain Description: HNHc Note: nucleases Location: 274031 4-2740446 bp Feature: gene Location: 2741246-2741485 bp Feature: gene Location: 2741689-2742129 bp Ori: QNK86258.1 Feature: domain Description: Nudix_Hydrolase_39 Location: 2741698-2742073 bp Feature: domain Description: Nudix_Hydrolase_39 Location: 2741 698-2742073 bp Feature: gene Location: 3742974-3743174 bp Ori: QNK90679.1 Feature: domain Description: SLH Location: 3743004-3743133 bp Feature: domain Description: SLH Location: 3743004-37431 33 bp Feature: gene Location: 3743580-3744308 bp Feature: gene Location: 3744574-3745864 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3744802-3745417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3744802-374541 7 bp Feature: gene Location: 3746422-3746607 bp Ori: QNK87149.1 Feature: domain Description: SLH Location: 3746437-3746566 bp Feature: domain Description: SLH Location: 3746437-3746566 bp Feature: gene Location: 3746734-3746913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_45 (pfam14947), RVT-Retrons, phage_arpU (TIGR01637), Cyt_C5_DNA_methylase (cl30459), RVT-GII, HNHc (smart00507), PDC1_MCP_like (cd12913), Tar (COG0840), GatA (COG0154), DedA (COG0586)
OmpR (COG0745), HK_WalK (NF033092), PRK11360 (two-component system sensor histidine kinase AtoS), xerS (PRK05084), INT_RitA_C_like (cd01188), RVT-CRISPR, GIIM (pfam08388), LolD (COG1136), YloV (TIGR03599), DegV (TIGR00762)
COG3752 (Steroid 5-alpha reductase family enzyme ), MFS_MefA_like (cd06173), HTH_36 (pfam13730), Nudix_Hydrolase_39 (cd04699), SLH (pfam00395)