myRT

myRT report for GCA_014337215.1_ASM1433721v1

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Seq: CP060635.1 Lachnospiraceae bacterium NSJ-29 chromosome, complete genome (3949724 bp)
Overview 1 RT 1: 216427-222207 bp 2 RT 2: 271369-277525 bp 3 RT 3: 2214299-2221424 bp Neighborhood of RT #1 [216427, 222269] HTH_ARAC SDR_c8 RVT-Retrons MviM PBP1_ABC_uncharacterized_transporter Neighborhood of RT #2 [271369, 277632] DppD AppF RVT-GII GIIM LysR LysR CitT CitT Neighborhood of RT #3 [2214299, 2221438] YccC WHTH_GntR WHTH_GntR RVT-GII GIIM PRK10535 LolD Feature: gene Location: 216427-217242 bp Ori: QNM08919.1 Feature: domain Description: HTH_ARAC Location: 216988-217207 bp Feature: domain Description: HTH_ARAC Location: 21 6988-21 7207 bp Feature: gene Location: 217342-218142 bp Ori: QNM08920.1 Feature: domain Description: SDR_c8 Location: 217369-218128 bp Feature: domain Description: SDR_c8 Location: 21 7369-21 81 28 bp Feature: gene Location: 218416-219438 bp Ori: QNM08921.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 218608-219163 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 8608-21 91 63 bp Feature: gene Location: 219481-220512 bp Ori: QNM08922.1 Feature: domain Description: MviM Location: 219499-220483 bp Feature: domain Description: MviM Location: 21 9499-220483 bp Feature: gene Location: 221181-222269 bp Ori: QNM10380.1 Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 221382-222207 bp Feature: domain Description: PBP1 _ABC_uncharacterized_transporter Location: 221 382-222207 bp Feature: gene Location: 271369-272166 bp Ori: QNM08957.1 Feature: domain Description: DppD Location: 271378-272146 bp Feature: domain Description: DppD Location: 271 378-2721 46 bp Feature: gene Location: 272156-273118 bp Ori: QNM08958.1 Feature: domain Description: AppF Location: 272171-273071 bp Feature: domain Description: AppF Location: 2721 71 -273071 bp Feature: gene Location: 273662-274942 bp Ori: QNM08959.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273872-274487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273872-274487 bp Feature: domain Description: GIIM Note: maturase Location: 274547-274766 bp Feature: domain Description: GIIM Note: maturase Location: 274547-274766 bp Feature: gene Location: 275050-275994 bp Ori: QNM08960.1 Feature: domain Description: LysR Location: 275053-275305 bp Feature: domain Description: LysR Location: 275053-275305 bp Feature: domain Description: LysR Location: 275563-275968 bp Feature: domain Description: LysR Location: 275563-275968 bp Feature: gene Location: 276196-277632 bp Ori: QNM08961.1 Feature: domain Description: CitT Location: 276274-276763 bp Feature: domain Description: CitT Location: 276274-276763 bp Feature: domain Description: CitT Location: 276823-277525 bp Feature: domain Description: CitT Location: 276823-277525 bp Feature: gene Location: 2214299-2215984 bp Ori: QNM10485.1 Feature: domain Description: YccC Location: 2215235-2215895 bp Feature: domain Description: YccC Location: 221 5235-221 5895 bp Feature: gene Location: 2216186-2217601 bp Ori: QNM07324.1 Feature: domain Description: WHTH_GntR Location: 2216216-2216390 bp Feature: domain Description: WHTH_GntR Location: 221 621 6-221 6390 bp Feature: domain Description: WHTH_GntR Location: 2216936-2217113 bp Feature: domain Description: WHTH_GntR Location: 221 6936-221 71 1 3 bp Feature: gene Location: 2217750-2219030 bp Ori: QNM07325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2217960-2218575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 7960-221 8575 bp Feature: domain Description: GIIM Note: maturase Location: 2218635-2218857 bp Feature: domain Description: GIIM Note: maturase Location: 221 8635-221 8857 bp Feature: gene Location: 2219559-2220770 bp Ori: QNM07326.1 Feature: domain Description: PRK10535 Location: 2219565-2220756 bp Feature: domain Description: PRK1 0535 Location: 221 9565-2220756 bp Feature: gene Location: 2220767-2221438 bp Ori: QNM07327.1 Feature: domain Description: LolD Location: 2220770-2221424 bp Feature: domain Description: LolD Location: 2220770-2221 424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), SDR_c8 (cd08930), RVT-Retrons, MviM (COG0673), PBP1_ABC_uncharacterized_transporter, DppD (COG0444), AppF (COG4608), RVT-GII, GIIM (pfam08388), LysR (COG0583)
CitT (pfam12431), YccC (COG1289), WHTH_GntR (cd07377), PRK10535 (macrolide ABC transporter ATP-binding protein/permease MacB), LolD (COG1136)