myRT

myRT report for GCA_014338485.1_ASM1433848v1

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Seq: CP060399.1 Xanthomonas hortorum pv. vitians LM16734, chromosome, complete sequence (5213310 bp)
Overview 1 RT 1: 174411-179503 bp 2 RT 2: 1601316-1609453 bp 3 RT 3: 3867965-3872476 bp Neighborhood of RT #1 [174411, 179607] RVT-Retrons Trypsin_2 DDE_Tnp_1 Neighborhood of RT #2 [1601316, 1609725] Spo0J DUF932 RVT_N RVT-GII YkfC PKcGMP_CC PKcGMP_CC DUF2130 SIR2_2 Neighborhood of RT #3 [3867965, 3872476] INT_C_like_1 RVT-Retrons AAA_21 AAA_21 Feature: gene Location: 174411-175190 bp Feature: gene Location: 175247-175984 bp Feature: gene Location: 176283-177905 bp Ori: QNM59026.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 176409-176997 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 76409-1 76997 bp Feature: domain Description: Trypsin_2 Location: 177393-177810 bp Feature: domain Description: Trypsin_2 Location: 1 77393-1 7781 0 bp Feature: gene Location: 178221-178325 bp Feature: gene Location: 178615-179607 bp Ori: QNM59028.1 Feature: domain Description: DDE_Tnp_1 Location: 178789-179503 bp Feature: domain Description: DDE_Tnp_1 Location: 1 78789-1 79503 bp Feature: gene Location: 1601316-1603358 bp Ori: QNM60372.1 Feature: domain Description: Spo0J Location: 1601379-1602234 bp Feature: domain Description: Spo0J Location: 1 601 379-1 602234 bp Feature: gene Location: 1603438-1604265 bp Ori: QNM60373.1 Feature: domain Description: DUF932 Location: 1603549-1604230 bp Feature: domain Description: DUF932 Location: 1 603549-1 604230 bp Feature: gene Location: 1605227-1606726 bp Ori: QNM60374.1 Feature: domain Description: RVT_N Location: 1605290-1605524 bp Feature: domain Description: RVT_N Location: 1 605290-1 605524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605578-1606220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 605578-1 606220 bp Feature: domain Description: YkfC Location: 1606301-1606520 bp Feature: domain Description: YkfC Location: 1 606301 -1 606520 bp Feature: gene Location: 1607084-1608493 bp Ori: QNM60375.1 Feature: domain Description: PKcGMP_CC Location: 1607267-1607327 bp Feature: domain Description: PKcGMP_CC Location: 1 607267-1 607327 bp Feature: domain Description: PKcGMP_CC Location: 1607474-1607528 bp Feature: domain Description: PKcGMP_CC Location: 1 607474-1 607528 bp Feature: domain Description: DUF2130 Location: 1607654-1608428 bp Feature: domain Description: DUF21 30 Location: 1 607654-1 608428 bp Feature: gene Location: 1608541-1609725 bp Ori: QNM60376.1 Feature: domain Description: SIR2_2 Location: 1609003-1609453 bp Feature: domain Description: SIR2_2 Location: 1 609003-1 609453 bp Feature: gene Location: 3867965-3868051 bp Feature: gene Location: 3868338-3869738 bp Ori: QNM62457.1 Feature: domain Description: INT_C_like_1 Location: 3869001-3869601 bp Feature: domain Description: INT_C_like_1 Location: 3869001 -3869601 bp Feature: gene Location: 3869952-3870908 bp Ori: QNM62458.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3870066-3870615 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3870066-387061 5 bp Feature: gene Location: 3870905-3872245 bp Ori: QNM62459.1 Feature: domain Description: AAA_21 Location: 3870989-3871367 bp Feature: domain Description: AAA_21 Location: 3870989-3871 367 bp Feature: domain Description: AAA_21 Location: 3871412-3871652 bp Feature: domain Description: AAA_21 Location: 3871 41 2-3871 652 bp Feature: gene Location: 3872285-3872476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), DDE_Tnp_1 (pfam01609), Spo0J (COG1475), DUF932 (pfam06067), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), PKcGMP_CC (pfam16808), DUF2130 (pfam09903)
SIR2_2 (pfam13289), INT_C_like_1 (cd01184), AAA_21 (pfam13304)