myRT

myRT report for GCA_014353035.1_ASM1435303v1

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Seq: CP060700.1 Staphylococcus pseudintermedius strain cdc 18-1182 chromosome, complete genome (2663277 bp)
Overview 1 RT 1: 156823-161329 bp 2 RT 2: 211369-216016 bp 3 RT 3: 321189-324908 bp 4 RT 4: 354435-361532 bp 5 RT 5: 596247-599977 bp 6 RT 6: 1104931-1114052 bp 7 RT 7: 1124364-1128018 bp 8 RT 8: 1601307-1607216 bp 9 RT 9: 1825432-1830186 bp 10 RT 10: 2067994-2075178 bp 11 RT 11: 2238326-2243281 bp 12 RT 12: 2471809-2475211 bp 13 RT 13: 2519140-2522822 bp Neighborhood of RT #1 [156823, 161364] PRK13673 RVT-GII GIIM PRK13512 HAD_Pase Neighborhood of RT #2 [211369, 216016] CcmA RVT-GII GIIM PRK09183 Neighborhood of RT #3 [321189, 324931] TrkA RVT-GII LysA Neighborhood of RT #4 [354435, 361543] FtsW RVT-GII GIIM COG3860 PycA Neighborhood of RT #5 [596247, 599977] SNase RVT-GII GIIM Neighborhood of RT #6 [1104931, 1114117] RVT-GII GIIM PRK11883 PRK12435 hemE HmoA RVT-GII GIIM EcsB Neighborhood of RT #7 [1124364, 1128018] PRK13676 YheB RVT-GII GIIM Neighborhood of RT #8 [1601307, 1607216] DUF3139 M20_ArgE_RocB RVT-GII GIIM NarK Neighborhood of RT #9 [1825432, 1830203] Dcm RVT-GII GIIM PhoA Neighborhood of RT #10 [2067994, 2075366] YeiB RVT-UG2 met_A_Alw26 Eco57I TaqI_C Neighborhood of RT #11 [2238326, 2243307] PenP RVT-GII GIIM HmoA AraJ Neighborhood of RT #12 [2471809, 2475225] RVT-GII GIIM ABCF_EF-3 Neighborhood of RT #13 [2519140, 2522824] RVT-GII GIIM eMpr eMpr Feature: gene Location: 156823-157212 bp Feature: domain Description: PRK13673 Location: 156835-157189 bp Feature: domain Description: PRK1 3673 Location: 1 56835-1 571 89 bp Feature: gene Location: 157550-157708 bp Feature: gene Location: 157810-159105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158035-158647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58035-1 58647 bp Feature: domain Description: GIIM Note: maturase Location: 158710-158941 bp Feature: domain Description: GIIM Note: maturase Location: 1 5871 0-1 58941 bp Feature: gene Location: 159184-160509 bp Feature: domain Description: PRK13512 Location: 159193-160501 bp Feature: domain Description: PRK1 351 2 Location: 1 591 93-1 60501 bp Feature: gene Location: 160540-161364 bp Feature: domain Description: HAD_Pase Location: 160555-161329 bp Feature: domain Description: HAD_Pase Location: 1 60555-1 61 329 bp Feature: gene Location: 211369-212250 bp Feature: domain Description: CcmA Location: 211375-212191 bp Feature: domain Description: CcmA Location: 21 1 375-21 21 91 bp Feature: gene Location: 212252-213007 bp Feature: gene Location: 213181-214431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213406-214018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3406-21 401 8 bp Feature: domain Description: GIIM Note: maturase Location: 214081-214312 bp Feature: domain Description: GIIM Note: maturase Location: 21 4081 -21 431 2 bp Feature: gene Location: 214809-215183 bp Feature: domain Description: PRK09183 Location: 214926-215172 bp Feature: domain Description: PRK091 83 Location: 21 4926-21 51 72 bp Feature: gene Location: 215888-216016 bp Feature: gene Location: 321189-321848 bp Feature: domain Description: TrkA Location: 321198-321840 bp Feature: domain Description: TrkA Location: 321 1 98-321 840 bp Feature: gene Location: 322127-322285 bp Feature: gene Location: 322387-323382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322612-323227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32261 2-323227 bp Feature: gene Location: 323503-323682 bp Feature: gene Location: 323840-324931 bp Feature: domain Description: LysA Location: 323876-324908 bp Feature: domain Description: LysA Location: 323876-324908 bp Feature: gene Location: 354435-355667 bp Feature: domain Description: FtsW Location: 354474-355614 bp Feature: domain Description: FtsW Location: 354474-35561 4 bp Feature: gene Location: 355989-356147 bp Feature: gene Location: 356249-357544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356474-357086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356474-357086 bp Feature: domain Description: GIIM Note: maturase Location: 357149-357380 bp Feature: domain Description: GIIM Note: maturase Location: 3571 49-357380 bp Feature: gene Location: 357713-357895 bp Feature: domain Description: COG3860 Location: 357728-357848 bp Feature: domain Description: COG3860 Location: 357728-357848 bp Feature: gene Location: 358094-361543 bp Feature: domain Description: PycA Location: 358100-361532 bp Feature: domain Description: PycA Location: 3581 00-361 532 bp Feature: gene Location: 596247-596753 bp Feature: domain Description: SNase Location: 596433-596748 bp Feature: domain Description: SNase Location: 596433-596748 bp Feature: gene Location: 597040-597198 bp Feature: gene Location: 597416-598594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597524-598136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597524-5981 36 bp Feature: domain Description: GIIM Note: maturase Location: 598199-598430 bp Feature: domain Description: GIIM Note: maturase Location: 5981 99-598430 bp Feature: gene Location: 598684-599553 bp Feature: gene Location: 599846-599977 bp Feature: gene Location: 1104931-1105065 bp Feature: gene Location: 1105234-1105392 bp Feature: gene Location: 1105494-1106789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1105719-1106331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0571 9-1 1 06331 bp Feature: domain Description: GIIM Note: maturase Location: 1106394-1106625 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 06394-1 1 06625 bp Feature: gene Location: 1106867-1108270 bp Feature: domain Description: PRK11883 Location: 1106876-1108259 bp Feature: domain Description: PRK1 1 883 Location: 1 1 06876-1 1 08259 bp Feature: gene Location: 1108276-1109208 bp Feature: domain Description: PRK12435 Location: 1108279-1109197 bp Feature: domain Description: PRK1 2435 Location: 1 1 08279-1 1 091 97 bp Feature: gene Location: 1109246-1110304 bp Feature: domain Description: hemE Location: 1109282-1110296 bp Feature: domain Description: hemE Location: 1 1 09282-1 1 1 0296 bp Feature: gene Location: 1110564-1111103 bp Feature: domain Description: HmoA Location: 1110807-1111026 bp Feature: domain Description: HmoA Location: 1 1 1 0807-1 1 1 1 026 bp Feature: gene Location: 1111171-1112466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1111396-1112008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 1 396-1 1 1 2008 bp Feature: domain Description: GIIM Note: maturase Location: 1112071-1112302 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 2071 -1 1 1 2302 bp Feature: gene Location: 1112568-1112726 bp Feature: gene Location: 1112999-1114117 bp Feature: domain Description: EcsB Location: 1113005-1114052 bp Feature: domain Description: EcsB Location: 1 1 1 3005-1 1 1 4052 bp Feature: gene Location: 1124364-1124708 bp Feature: domain Description: PRK13676 Location: 1124367-1124703 bp Feature: domain Description: PRK1 3676 Location: 1 1 24367-1 1 24703 bp Feature: gene Location: 1124797-1125927 bp Feature: domain Description: YheB Location: 1124800-1125925 bp Feature: domain Description: YheB Location: 1 1 24800-1 1 25925 bp Feature: gene Location: 1126166-1127461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126391-1127003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 26391 -1 1 27003 bp Feature: domain Description: GIIM Note: maturase Location: 1127066-1127297 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 27066-1 1 27297 bp Feature: gene Location: 1127563-1127721 bp Feature: gene Location: 1127827-1128018 bp Feature: gene Location: 1601307-1601678 bp Feature: domain Description: DUF3139 Location: 1601331-1601562 bp Feature: domain Description: DUF31 39 Location: 1 601 331 -1 601 562 bp Feature: gene Location: 1601814-1603445 bp Feature: domain Description: M20_ArgE_RocB Location: 1601883-1603434 bp Feature: domain Description: M20_ArgE_RocB Location: 1 601 883-1 603434 bp Feature: gene Location: 1603553-1604848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603778-1604390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603778-1 604390 bp Feature: domain Description: GIIM Note: maturase Location: 1604453-1604684 bp Feature: domain Description: GIIM Note: maturase Location: 1 604453-1 604684 bp Feature: gene Location: 1605429-1606607 bp Feature: domain Description: NarK Location: 1605444-1606587 bp Feature: domain Description: NarK Location: 1 605444-1 606587 bp Feature: gene Location: 1607040-1607216 bp Feature: gene Location: 1825432-1826580 bp Feature: domain Description: Dcm Location: 1825435-1826572 bp Feature: domain Description: Dcm Location: 1 825435-1 826572 bp Feature: gene Location: 1826921-1827100 bp Feature: gene Location: 1827165-1828088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827261-1827876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 827261 -1 827876 bp Feature: domain Description: GIIM Note: maturase Location: 1827939-1828053 bp Feature: domain Description: GIIM Note: maturase Location: 1 827939-1 828053 bp Feature: gene Location: 1828543-1828725 bp Feature: gene Location: 1828764-1830203 bp Feature: domain Description: PhoA Location: 1828785-1830186 bp Feature: domain Description: PhoA Location: 1 828785-1 8301 86 bp Feature: gene Location: 2067994-2068179 bp Feature: gene Location: 2068344-2069561 bp Feature: domain Description: YeiB Location: 2068380-2069547 bp Feature: domain Description: YeiB Location: 2068380-2069547 bp Feature: gene Location: 2070146-2071462 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2070326-2071142 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2070326-2071 1 42 bp Feature: gene Location: 2071422-2071688 bp Feature: gene Location: 2072061-2075366 bp Feature: domain Description: met_A_Alw26 Location: 2073336-2073453 bp Feature: domain Description: met_A_Alw26 Location: 2073336-2073453 bp Feature: domain Description: Eco57I Location: 2074185-2074506 bp Feature: domain Description: Eco57I Location: 20741 85-2074506 bp Feature: domain Description: TaqI_C Location: 2074824-2075178 bp Feature: domain Description: TaqI_C Location: 2074824-20751 78 bp Feature: gene Location: 2238326-2239213 bp Feature: domain Description: PenP Location: 2238380-2239205 bp Feature: domain Description: PenP Location: 2238380-2239205 bp Feature: gene Location: 2239397-2239540 bp Feature: gene Location: 2239971-2241266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240196-2240808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22401 96-2240808 bp Feature: domain Description: GIIM Note: maturase Location: 2240871-2241102 bp Feature: domain Description: GIIM Note: maturase Location: 2240871 -2241 1 02 bp Feature: gene Location: 2241418-2241846 bp Feature: domain Description: HmoA Location: 2241550-2241772 bp Feature: domain Description: HmoA Location: 2241 550-2241 772 bp Feature: gene Location: 2242090-2243307 bp Feature: domain Description: AraJ Location: 2242138-2243281 bp Feature: domain Description: AraJ Location: 22421 38-2243281 bp Feature: gene Location: 2471809-2471961 bp Feature: gene Location: 2471978-2472136 bp Feature: gene Location: 2472238-2473470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472463-2473075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472463-2473075 bp Feature: domain Description: GIIM Note: maturase Location: 2473138-2473369 bp Feature: domain Description: GIIM Note: maturase Location: 24731 38-2473369 bp Feature: gene Location: 2474510-2474677 bp Feature: gene Location: 2474761-2475225 bp Feature: domain Description: ABCF_EF-3 Location: 2474767-2475211 bp Feature: domain Description: ABCF_EF-3 Location: 2474767-247521 1 bp Feature: gene Location: 2519140-2519295 bp Feature: gene Location: 2519401-2519559 bp Feature: gene Location: 2519661-2520956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2519886-2520498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 9886-2520498 bp Feature: domain Description: GIIM Note: maturase Location: 2520561-2520792 bp Feature: domain Description: GIIM Note: maturase Location: 2520561 -2520792 bp Feature: gene Location: 2521229-2521954 bp Feature: domain Description: eMpr Location: 2521361-2521949 bp Feature: domain Description: eMpr Location: 2521 361 -2521 949 bp Feature: gene Location: 2522108-2522824 bp Feature: domain Description: eMpr Location: 2522186-2522822 bp Feature: domain Description: eMpr Location: 25221 86-2522822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13673 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), PRK13512 (coenzyme A disulfide reductase; Provisional), HAD_Pase (cd16418), CcmA (COG4133), PRK09183 (transposase/IS protein; Provisional), TrkA (COG0569), LysA (COG0019), FtsW (COG0772)
COG3860 (Uncharacterized protein, DUF2087 family ), PycA (COG1038), SNase (pfam00565), PRK11883 (protoporphyrinogen oxidase; Reviewed), PRK12435 (ferrochelatase; Provisional), hemE (TIGR01464), HmoA (COG2329), EcsB (pfam05975), PRK13676 (YlbF/YmcA family competence regulator), YheB (COG4399)
DUF3139 (pfam11337), M20_ArgE_RocB (cd05654), NarK (COG2223), Dcm (COG0270), PhoA (COG1785), YeiB (COG2311), RVT-UG2, met_A_Alw26 (TIGR02987), Eco57I (pfam07669), TaqI_C (pfam12950)
PenP (COG2367), AraJ (COG2814), ABCF_EF-3 (cd03221), eMpr (COG3591)