myRT

myRT report for GCA_014357995.1_ASM1435799v1

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Seq: CP053303.1 Burkholderia cenocepacia strain K56-2 plasmid pBCK56, complete sequence (92661 bp)
Overview 1 RT 1: 7365-13978 bp Neighborhood of RT #1 [7365, 13978] PolY_like COG4544 RVT-GII SRAP Feature: gene Location: 7365-8825 bp Ori: QNN09318.1 Feature: domain Description: PolY_like Location: 7368-8352 bp Feature: domain Description: PolY_like Location: 7368-8352 bp Feature: gene Location: 8764-9480 bp Ori: QNN09319.1 Feature: domain Description: COG4544 Location: 8869-9304 bp Feature: domain Description: COG4544 Location: 8869-9304 bp Feature: gene Location: 9881-11413 bp Ori: QNN09320.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10292-10982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0292-1 0982 bp Feature: gene Location: 11469-12380 bp Ori: QNN09321.1 Feature: domain Description: SRAP Location: 11829-12345 bp Feature: domain Description: SRAP Location: 1 1 829-1 2345 bp Feature: gene Location: 13076-13978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII, SRAP (pfam02586)

Seq: CP053302.1 Burkholderia cenocepacia strain K56-2 chromosome 3, complete sequence (765157 bp)
Overview 1 RT 1: 127066-132414 bp 2 RT 2: 601364-605183 bp Neighborhood of RT #1 [127066, 132437] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Neighborhood of RT #2 [601364, 605183] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 127066-127821 bp Ori: QNN08779.1 Feature: domain Description: his_ut_repres Location: 127144-127816 bp Feature: domain Description: his_ut_repres Location: 12 7144-12 7816 bp Feature: gene Location: 128056-128628 bp Ori: QNN08780.1 Feature: domain Description: FIN Location: 128242-128593 bp Feature: domain Description: FIN Location: 12 82 42 -12 8593 bp Feature: gene Location: 128882-130231 bp Ori: QNN08781.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129347-129983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 9347-12 9983 bp Feature: gene Location: 130557-130886 bp Ori: QNN08782.1 Feature: domain Description: Histone_HNS Location: 130578-130815 bp Feature: domain Description: Histone_HNS Location: 130578-130815 bp Feature: gene Location: 131190-132437 bp Ori: QNN08783.1 Feature: domain Description: MFS_MucK Location: 131280-132414 bp Feature: domain Description: MFS_MucK Location: 1312 80-132 414 bp Feature: gene Location: 601364-602137 bp Ori: QNN09192.1 Feature: domain Description: PRK09183 Location: 601367-602129 bp Feature: domain Description: PRK09183 Location: 601367-602 12 9 bp Feature: gene Location: 602447-603295 bp Ori: QNN09193.1 Feature: domain Description: PRK09409 Location: 602450-603278 bp Feature: domain Description: PRK09409 Location: 602 450-6032 78 bp Feature: gene Location: 603287-604261 bp Ori: QNN09194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603698-604217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603698-6042 17 bp Feature: gene Location: 604591-604923 bp Ori: QNN09195.1 Feature: domain Description: TnpB_IS66 Location: 604618-604906 bp Feature: domain Description: TnpB_IS66 Location: 604618-604906 bp Feature: gene Location: 604920-605183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371), PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: CP053301.1 Burkholderia cenocepacia strain K56-2 chromosome 2, complete sequence (3211025 bp)
Overview 1 RT 1: 1106554-1113097 bp 2 RT 2: 2778966-2788171 bp Neighborhood of RT #1 [1106554, 1113111] PRK08133 COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Neighborhood of RT #2 [2778966, 2788212] MFS_SV2_like MscK RVT-GII GIIM COG3547 ALDH_F7_AASADH Feature: gene Location: 1106554-1107744 bp Ori: QNN06788.1 Gene: metZ Feature: domain Description: PRK08133 Location: 1106560-1107739 bp Feature: domain Description: PRK0813 3 Location: 1106560-110773 9 bp Feature: gene Location: 1108421-1109455 bp Ori: QNN06789.1 Feature: domain Description: COG3547 Location: 1108436-1109399 bp Feature: domain Description: COG3 547 Location: 110843 6-11093 99 bp Feature: gene Location: 1109704-1110993 bp Ori: QNN06790.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109959-1110574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109959-1110574 bp Feature: domain Description: GIIM Note: maturase Location: 1110634-1110835 bp Feature: domain Description: GIIM Note: maturase Location: 111063 4-111083 5 bp Feature: gene Location: 1111113-1112078 bp Ori: QNN06791.1 Gene: bceM Feature: domain Description: GDP_MD_SDR_e Location: 1111149-1112046 bp Feature: domain Description: GDP_MD_SDR_e Location: 1111149-1112046 bp Feature: gene Location: 1112065-1113111 bp Ori: QNN06792.1 Gene: bceN Feature: domain Description: Gmd Location: 1112080-1113097 bp Feature: domain Description: Gmd Location: 1112080-1113 097 bp Feature: gene Location: 2778966-2780384 bp Ori: QNN08281.1 Feature: domain Description: MFS_SV2_like Location: 2779086-2780337 bp Feature: domain Description: MFS_SV2_like Location: 2779086-27803 3 7 bp Feature: gene Location: 2780833-2783295 bp Ori: QNN08282.1 Feature: domain Description: MscK Location: 2780911-2783254 bp Feature: domain Description: MscK Location: 2780911-2783 254 bp Feature: gene Location: 2783439-2784728 bp Ori: QNN08283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2783694-2784309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2783 694-27843 09 bp Feature: domain Description: GIIM Note: maturase Location: 2784369-2784570 bp Feature: domain Description: GIIM Note: maturase Location: 27843 69-2784570 bp Feature: gene Location: 2784977-2786011 bp Ori: QNN08284.1 Feature: domain Description: COG3547 Location: 2784992-2785955 bp Feature: domain Description: COG3 547 Location: 2784992-2785955 bp Feature: gene Location: 2786701-2788212 bp Ori: QNN08285.1 Feature: domain Description: ALDH_F7_AASADH Location: 2786755-2788171 bp Feature: domain Description: ALDH_F7_AASADH Location: 2786755-2788171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08133 (O-succinylhomoserine sulfhydrylase; Validated), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), MFS_SV2_like (cd17316), MscK (COG3264), ALDH_F7_AASADH (cd07130)

Seq: CP053300.1 Burkholderia cenocepacia strain K56-2 chromosome 1, complete sequence (3673077 bp)
Overview 1 RT 1: 105815-110366 bp Neighborhood of RT #1 [105815, 110398] HipB RVT-GII D Feature: gene Location: 105815-105988 bp Feature: gene Location: 106142-106612 bp Ori: QNN02533.1 Feature: domain Description: HipB Location: 106145-106349 bp Feature: domain Description: HipB Location: 10614 5-10634 9 bp Feature: gene Location: 107184-108716 bp Ori: QNN02534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107595-108285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107595-108285 bp Feature: gene Location: 108844-109140 bp Feature: gene Location: 109328-110398 bp Ori: QNN02536.1 Feature: domain Description: D Location: 109382-110366 bp Feature: domain Description: D Location: 109382-110366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-GII, D (PHA02561)