myRT

myRT report for GCA_014395975.1_ASM1439597v1

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Seq: CP060714.1 Diaphorobacter ruginosibacter strain DSM 27467 chromosome, complete genome (5167372 bp)
Overview 1 RT 1: 704935-716225 bp 2 RT 2: 1416650-1426427 bp 3 RT 3: 3127675-3132701 bp Neighborhood of RT #1 [704935, 716545] resist_ArsH PRK09413 RVT-UG1 HATPase_c_3 BaeS Neighborhood of RT #2 [1416650, 1426450] SWIM RVT-Retrons TPR_hemY_coli PRK06975 Neighborhood of RT #3 [3127675, 3132701] He_PIG He_PIG He_PIG IPTL-CTERM RVT-GII GIIM Feature: gene Location: 704935-705648 bp Ori: QNN57923.1 Gene: arsH Feature: domain Description: resist_ArsH Location: 704956-705604 bp Feature: domain Description: resist_ArsH Location: 704956-705604 bp Feature: gene Location: 705864-707110 bp Feature: domain Description: PRK09413 Location: 705888-706245 bp Feature: domain Description: PRK0941 3 Location: 705888-706245 bp Feature: gene Location: 707669-711529 bp Ori: QNN57924.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 708335-708893 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 708335-708893 bp Feature: gene Location: 711607-713589 bp Ori: QNN57925.1 Feature: domain Description: HATPase_c_3 Location: 711694-712021 bp Feature: domain Description: HATPase_c_3 Location: 71 1 694-71 2021 bp Feature: gene Location: 714869-716545 bp Ori: QNN57926.1 Feature: domain Description: BaeS Location: 715322-716225 bp Feature: domain Description: BaeS Location: 71 5322-71 6225 bp Feature: gene Location: 1416650-1419730 bp Feature: gene Location: 1419738-1421510 bp Ori: QNN58486.1 Feature: domain Description: SWIM Location: 1421343-1421427 bp Feature: domain Description: SWIM Location: 1 421 343-1 421 427 bp Feature: gene Location: 1421878-1423899 bp Ori: QNN58487.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1422484-1423111 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 422484-1 4231 1 1 bp Feature: gene Location: 1423980-1425257 bp Ori: QNN58488.1 Feature: domain Description: TPR_hemY_coli Location: 1424043-1425240 bp Feature: domain Description: TPR_hemY_coli Location: 1 424043-1 425240 bp Feature: gene Location: 1425281-1426450 bp Ori: QNN58489.1 Feature: domain Description: PRK06975 Location: 1425311-1426427 bp Feature: domain Description: PRK06975 Location: 1 42531 1 -1 426427 bp Feature: gene Location: 3127675-3128619 bp Ori: QNN55759.1 Feature: domain Description: He_PIG Location: 3127789-3127903 bp Feature: domain Description: He_PIG Location: 31 27789-31 27903 bp Feature: domain Description: He_PIG Location: 3128053-3128170 bp Feature: domain Description: He_PIG Location: 31 28053-31 281 70 bp Feature: domain Description: He_PIG Location: 3128308-3128428 bp Feature: domain Description: He_PIG Location: 31 28308-31 28428 bp Feature: domain Description: IPTL-CTERM Location: 3128527-3128608 bp Feature: domain Description: IPTL-CTERM Location: 31 28527-31 28608 bp Feature: gene Location: 3128708-3128929 bp Feature: gene Location: 3129432-3130817 bp Ori: QNN55760.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3129783-3130398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 29783-31 30398 bp Feature: domain Description: GIIM Note: maturase Location: 3130455-3130659 bp Feature: domain Description: GIIM Note: maturase Location: 31 30455-31 30659 bp Feature: gene Location: 3131298-3131435 bp Feature: gene Location: 3132492-3132701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), PRK09413 (IS2 repressor TnpA; Reviewed), RVT-UG1, HATPase_c_3 (pfam13589), BaeS (COG0642), SWIM (pfam04434), RVT-Retrons, TPR_hemY_coli (TIGR00540), PRK06975 (bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed), He_PIG (pfam05345)
IPTL-CTERM (pfam18203), RVT-GII, GIIM (pfam08388)