myRT

myRT report for GCA_014490015.1_ASM1449001v1

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Seq: CP060861.1 Enterococcus faecium strain AML0157 chromosome, complete genome (2906760 bp)
Overview 1 RT 1: 1298565-1305334 bp 2 RT 2: 1889598-1896208 bp 3 RT 3: 2776263-2789008 bp Neighborhood of RT #1 [1298565, 1306200] TcpE FMT_core_like_6 AAA_10 RVT-GII AAA_10 TrbL Neighborhood of RT #2 [1889598, 1896279] Transposase_mut AAA_10 RVT-GII AAA_10 TcpE Neighborhood of RT #3 [2776263, 2789008] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Feature: gene Location: 1298565-1298954 bp Feature: domain Description: TcpE Location: 1298583-1298880 bp Feature: domain Description: TcpE Location: 1 298583-1 298880 bp Feature: gene Location: 1298941-1300491 bp Feature: domain Description: FMT_core_like_6 Location: 1299052-1299346 bp Feature: domain Description: FMT_core_like_6 Location: 1 299052-1 299346 bp Feature: domain Description: AAA_10 Location: 1300270-1300453 bp Feature: domain Description: AAA_1 0 Location: 1 300270-1 300453 bp Feature: gene Location: 1301188-1303014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301488-1302187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 488-1 3021 87 bp Feature: gene Location: 1303226-1304068 bp Feature: domain Description: AAA_10 Location: 1303229-1304033 bp Feature: domain Description: AAA_1 0 Location: 1 303229-1 304033 bp Feature: gene Location: 1304068-1306200 bp Feature: domain Description: TrbL Location: 1304980-1305334 bp Feature: domain Description: TrbL Location: 1 304980-1 305334 bp Feature: gene Location: 1889598-1890785 bp Feature: domain Description: Transposase_mut Location: 1889601-1890744 bp Feature: domain Description: Transposase_mut Location: 1 889601 -1 890744 bp Feature: gene Location: 1890878-1891696 bp Feature: domain Description: AAA_10 Location: 1890884-1891682 bp Feature: domain Description: AAA_1 0 Location: 1 890884-1 891 682 bp Feature: gene Location: 1891830-1893656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892130-1892829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8921 30-1 892829 bp Feature: gene Location: 1894353-1895903 bp Feature: domain Description: AAA_10 Location: 1895682-1895865 bp Feature: domain Description: AAA_1 0 Location: 1 895682-1 895865 bp Feature: gene Location: 1895890-1896279 bp Feature: domain Description: TcpE Location: 1895908-1896208 bp Feature: domain Description: TcpE Location: 1 895908-1 896208 bp Feature: gene Location: 2776263-2776406 bp Feature: gene Location: 2776499-2777683 bp Feature: domain Description: HTH_XRE Location: 2776529-2776673 bp Feature: domain Description: HTH_XRE Location: 2776529-2776673 bp Feature: domain Description: Rol_Rep_N Location: 2776706-2776970 bp Feature: domain Description: Rol_Rep_N Location: 2776706-2776970 bp Feature: domain Description: Rep_trans Location: 2776994-2777606 bp Feature: domain Description: Rep_trans Location: 2776994-2777606 bp Feature: gene Location: 2778563-2780473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778896-2779634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778896-2779634 bp Feature: domain Description: HNHc Note: nucleases Location: 2780189-2780354 bp Feature: domain Description: HNHc Note: nucleases Location: 27801 89-2780354 bp Feature: gene Location: 2780661-2780801 bp Feature: gene Location: 2780814-2781317 bp Feature: domain Description: ArdA Location: 2780832-2781303 bp Feature: domain Description: ArdA Location: 2780832-2781 303 bp Feature: gene Location: 2781377-2781766 bp Feature: domain Description: TcpE Location: 2781395-2781695 bp Feature: domain Description: TcpE Location: 2781 395-2781 695 bp Feature: gene Location: 2781753-2783303 bp Feature: domain Description: AAA_10 Location: 2783082-2783265 bp Feature: domain Description: AAA_1 0 Location: 2783082-2783265 bp Feature: gene Location: 2784000-2785826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2784300-2784999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2784300-2784999 bp Feature: gene Location: 2785960-2786880 bp Feature: domain Description: AAA_10 Location: 2785966-2786845 bp Feature: domain Description: AAA_1 0 Location: 2785966-2786845 bp Feature: gene Location: 2786885-2789008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), FMT_core_like_6 (cd08820), AAA_10 (pfam12846), RVT-GII, TrbL (pfam04610), Transposase_mut (pfam00872), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), HNHc (smart00507)
ArdA (pfam07275)

Seq: CP060863.1 Enterococcus faecium strain AML0157 plasmid pAML0157.2, complete sequence (261677 bp)
Overview 1 RT 1: 24359-30212 bp Neighborhood of RT #1 [24359, 30331] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 24359-26053 bp Feature: domain Description: VirB4 Location: 24677-25361 bp Feature: domain Description: VirB4 Location: 2 4677-2 5361 bp Feature: gene Location: 26321-26554 bp Feature: gene Location: 26741-28618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27056-27794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7056-2 7794 bp Feature: domain Description: HNHc Note: nucleases Location: 28352-28505 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8352 -2 8505 bp Feature: gene Location: 28806-29126 bp Feature: gene Location: 29126-30331 bp Feature: domain Description: Glucosaminidase Location: 29402-29798 bp Feature: domain Description: Glucosaminidase Location: 2 9402 -2 9798 bp Feature: domain Description: Peptidase_M23 Location: 29975-30212 bp Feature: domain Description: Peptidase_M2 3 Location: 2 9975-302 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)