myRT

myRT report for GCA_014490055.1_ASM1449005v1

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Seq: CP061007.1 Saccharopolyspora spinosa strain CCTCC M206084 chromosome, complete genome (8876435 bp)
Overview 1 RT 1: 1006893-1014220 bp 2 RT 2: 1595399-1602273 bp 3 RT 3: 1676366-1681970 bp 4 RT 4: 3436101-3444149 bp 5 RT 5: 4783412-4791883 bp 6 RT 6: 6258311-6260532 bp 7 RT 7: 7193248-7202268 bp 8 RT 8: 7296940-7302224 bp 9 RT 9: 7361613-7369046 bp 10 RT 10: 7935709-7941950 bp 11 RT 11: 8277792-8293060 bp 12 RT 12: 8332441-8344428 bp 13 RT 13: 8805481-8810137 bp Neighborhood of RT #1 [1006893, 1014220] YHI9 PHZA_PHZB RVT-GII GIIM RVT-GII Intron_maturas2 DDE_Tnp_4 Neighborhood of RT #2 [1595399, 1602273] ALDH_KGSADH HTH_32 HTH_32 DDE_3 RVT_N RVT-GII GIIM Neighborhood of RT #3 [1676366, 1682050] DDE_5 RVT-GII GIIM Peptidase_C39_2 Neighborhood of RT #4 [3436101, 3444184] PEP_mutase HTH_32 HTH_32 DDE_3 RVT_N RVT-GII GIIM AXO Neighborhood of RT #5 [4783412, 4791894] LysR DDE_Tnp_4 RVT-GII GIIM Penicil_amidase M20_Acy1-like Neighborhood of RT #6 [6258311, 6260532] RVT-GII RsdA_SigD_bd Neighborhood of RT #7 [7193248, 7202297] GlcD GlpC IS5 RVT_N RVT-GII GIIM HTH_32 HTH_32 DDE_3 DDE_Tnp_4 Neighborhood of RT #8 [7296940, 7302224] PRK02186 eno RVT-GII Sialidase_non-viral Neighborhood of RT #9 [7361613, 7369072] RVT-GII RVT-GII GIIM HTH_32 HTH_32 DDE_3 COG5659 COG5659 Neighborhood of RT #10 [7935709, 7942570] DDE_Tnp_1_2 DUF4096 RVT-GII GIIM DDE_5 RVT-GII GIIM IstB_IS21 HTH_38 COG4584 Neighborhood of RT #11 [8277792, 8293060] RVT-GII GIIM Peptidase_C14 KOG1803 KOG1803 RVT-GII GIIM zf-ISL3 Neighborhood of RT #12 [8332441, 8346731] HTH_32 rve_3 DDE_5 RVT-GII GIIM HTH_32 HTH_32 DDE_3 ABC_SMC_barmotin LGIC_TM_nAChR Neighborhood of RT #13 [8805481, 8810137] COG5659 HTH_32 HTH_32 DDE_3 RVT-GII GIIM DDE_5 Feature: gene Location: 1006893-1007735 bp Feature: domain Description: YHI9 Location: 1006908-1007730 bp Feature: domain Description: YHI9 Location: 1 006908-1 007730 bp Feature: gene Location: 1007752-1008252 bp Feature: domain Description: PHZA_PHZB Location: 1007785-1008247 bp Feature: domain Description: PHZA_PHZB Location: 1 007785-1 008247 bp Feature: gene Location: 1008504-1010222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008768-1009464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 008768-1 009464 bp Feature: domain Description: GIIM Note: maturase Location: 1009536-1009722 bp Feature: domain Description: GIIM Note: maturase Location: 1 009536-1 009722 bp Feature: gene Location: 1010258-1011838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010336-1011131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 0336-1 01 1 1 31 bp Feature: domain Description: Intron_maturas2 Location: 1011227-1011461 bp Feature: domain Description: Intron_maturas2 Location: 1 01 1 227-1 01 1 461 bp Feature: gene Location: 1012083-1012907 bp Feature: domain Description: DDE_Tnp_4 Location: 1012404-1012878 bp Feature: domain Description: DDE_Tnp_4 Location: 1 01 2404-1 01 2878 bp Feature: gene Location: 1013834-1014220 bp Feature: gene Location: 1595399-1596868 bp Feature: domain Description: ALDH_KGSADH Location: 1595453-1596788 bp Feature: domain Description: ALDH_KGSADH Location: 1 595453-1 596788 bp Feature: gene Location: 1596981-1598159 bp Feature: domain Description: HTH_32 Location: 1597155-1597308 bp Feature: domain Description: HTH_32 Location: 1 5971 55-1 597308 bp Feature: domain Description: HTH_32 Location: 1597401-1597614 bp Feature: domain Description: HTH_32 Location: 1 597401 -1 59761 4 bp Feature: domain Description: DDE_3 Location: 1597737-1598103 bp Feature: domain Description: DDE_3 Location: 1 597737-1 5981 03 bp Feature: gene Location: 1598781-1600559 bp Feature: domain Description: RVT_N Location: 1598859-1599096 bp Feature: domain Description: RVT_N Location: 1 598859-1 599096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1599156-1599813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5991 56-1 59981 3 bp Feature: domain Description: GIIM Note: maturase Location: 1599873-1600104 bp Feature: domain Description: GIIM Note: maturase Location: 1 599873-1 6001 04 bp Feature: gene Location: 1600916-1601167 bp Feature: gene Location: 1601554-1602273 bp Feature: gene Location: 1676366-1676581 bp Feature: gene Location: 1676225-1677658 bp Feature: domain Description: DDE_5 Location: 1676459-1677272 bp Feature: domain Description: DDE_5 Location: 1 676459-1 677272 bp Feature: gene Location: 1677838-1679244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678198-1678858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6781 98-1 678858 bp Feature: domain Description: GIIM Note: maturase Location: 1678939-1679170 bp Feature: domain Description: GIIM Note: maturase Location: 1 678939-1 6791 70 bp Feature: gene Location: 1680796-1681023 bp Feature: gene Location: 1681085-1682050 bp Feature: domain Description: Peptidase_C39_2 Location: 1681550-1681970 bp Feature: domain Description: Peptidase_C39_2 Location: 1 681 550-1 681 970 bp Feature: gene Location: 3436101-3437531 bp Feature: domain Description: PEP_mutase Location: 3436740-3437454 bp Feature: domain Description: PEP_mutase Location: 3436740-3437454 bp Feature: gene Location: 3437698-3438876 bp Feature: domain Description: HTH_32 Location: 3437872-3438025 bp Feature: domain Description: HTH_32 Location: 3437872-3438025 bp Feature: domain Description: HTH_32 Location: 3438118-3438331 bp Feature: domain Description: HTH_32 Location: 34381 1 8-3438331 bp Feature: domain Description: DDE_3 Location: 3438454-3438820 bp Feature: domain Description: DDE_3 Location: 3438454-3438820 bp Feature: gene Location: 3439498-3441276 bp Feature: domain Description: RVT_N Location: 3439576-3439813 bp Feature: domain Description: RVT_N Location: 3439576-343981 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3439873-3440530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3439873-3440530 bp Feature: domain Description: GIIM Note: maturase Location: 3440590-3440821 bp Feature: domain Description: GIIM Note: maturase Location: 3440590-3440821 bp Feature: gene Location: 3441602-3442168 bp Feature: gene Location: 3442250-3444184 bp Feature: domain Description: AXO Location: 3442268-3444149 bp Feature: domain Description: AXO Location: 3442268-34441 49 bp Feature: gene Location: 4783412-4784461 bp Feature: domain Description: LysR Location: 4783478-4783931 bp Feature: domain Description: LysR Location: 4783478-4783931 bp Feature: gene Location: 4784523-4785359 bp Feature: domain Description: DDE_Tnp_4 Location: 4784907-4785333 bp Feature: domain Description: DDE_Tnp_4 Location: 4784907-4785333 bp Feature: gene Location: 4786109-4787359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4786325-4786976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4786325-4786976 bp Feature: domain Description: GIIM Note: maturase Location: 4787069-4787294 bp Feature: domain Description: GIIM Note: maturase Location: 4787069-4787294 bp Feature: gene Location: 4787666-4790503 bp Feature: domain Description: Penicil_amidase Location: 4788026-4790462 bp Feature: domain Description: Penicil_amidase Location: 4788026-4790462 bp Feature: gene Location: 4790638-4791894 bp Feature: domain Description: M20_Acy1-like Location: 4790689-4791883 bp Feature: domain Description: M20_Acy1 -like Location: 4790689-4791 883 bp Feature: gene Location: 6258311-6258463 bp Feature: gene Location: 6258554-6258952 bp Feature: gene Location: 6258893-6259408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6259007-6259403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6259007-6259403 bp Feature: gene Location: 6259463-6260299 bp Feature: domain Description: RsdA_SigD_bd Location: 6259685-6259826 bp Feature: domain Description: RsdA_SigD_bd Location: 6259685-6259826 bp Feature: gene Location: 6260299-6260532 bp Feature: gene Location: 7193248-7196112 bp Feature: domain Description: GlcD Location: 7193311-7194760 bp Feature: domain Description: GlcD Location: 71 9331 1 -71 94760 bp Feature: domain Description: GlpC Location: 7194865-7196056 bp Feature: domain Description: GlpC Location: 71 94865-71 96056 bp Feature: gene Location: 7196253-7196648 bp Feature: domain Description: IS5 Location: 7196472-7196637 bp Feature: domain Description: IS5 Location: 71 96472-71 96637 bp Feature: gene Location: 7197061-7198839 bp Feature: domain Description: RVT_N Location: 7197139-7197376 bp Feature: domain Description: RVT_N Location: 71 971 39-71 97376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7197436-7198093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 97436-71 98093 bp Feature: domain Description: GIIM Note: maturase Location: 7198153-7198384 bp Feature: domain Description: GIIM Note: maturase Location: 71 981 53-71 98384 bp Feature: gene Location: 7199461-7200558 bp Feature: domain Description: HTH_32 Location: 7199554-7199707 bp Feature: domain Description: HTH_32 Location: 71 99554-71 99707 bp Feature: domain Description: HTH_32 Location: 7199800-7200013 bp Feature: domain Description: HTH_32 Location: 71 99800-720001 3 bp Feature: domain Description: DDE_3 Location: 7200136-7200502 bp Feature: domain Description: DDE_3 Location: 72001 36-7200502 bp Feature: gene Location: 7201473-7202297 bp Feature: domain Description: DDE_Tnp_4 Location: 7201794-7202268 bp Feature: domain Description: DDE_Tnp_4 Location: 7201 794-7202268 bp Feature: gene Location: 7296940-7298190 bp Feature: domain Description: PRK02186 Location: 7297147-7298176 bp Feature: domain Description: PRK021 86 Location: 72971 47-72981 76 bp Feature: gene Location: 7298319-7299602 bp Feature: domain Description: eno Location: 7298322-7299585 bp Feature: domain Description: eno Location: 7298322-7299585 bp Feature: gene Location: 7300525-7300962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7300654-7300840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7300654-7300840 bp Feature: gene Location: 7301094-7301933 bp Feature: domain Description: Sialidase_non-viral Location: 7301130-7301667 bp Feature: domain Description: Sialidase_non-viral Location: 7301 1 30-7301 667 bp Feature: gene Location: 7302063-7302224 bp Feature: gene Location: 7361613-7362590 bp Feature: gene Location: 7362607-7363062 bp Feature: gene Location: 7363978-7365468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7364386-7365076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7364386-7365076 bp Feature: gene Location: 7365552-7366898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7365852-7366512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7365852-736651 2 bp Feature: domain Description: GIIM Note: maturase Location: 7366593-7366824 bp Feature: domain Description: GIIM Note: maturase Location: 7366593-7366824 bp Feature: gene Location: 7366984-7368225 bp Feature: domain Description: HTH_32 Location: 7367077-7367230 bp Feature: domain Description: HTH_32 Location: 7367077-7367230 bp Feature: domain Description: HTH_32 Location: 7367323-7367536 bp Feature: domain Description: HTH_32 Location: 7367323-7367536 bp Feature: domain Description: DDE_3 Location: 7367659-7368091 bp Feature: domain Description: DDE_3 Location: 7367659-7368091 bp Feature: gene Location: 7368446-7369072 bp Feature: domain Description: COG5659 Location: 7368512-7368665 bp Feature: domain Description: COG5659 Location: 736851 2-7368665 bp Feature: domain Description: COG5659 Location: 7368716-7369046 bp Feature: domain Description: COG5659 Location: 736871 6-7369046 bp Feature: gene Location: 7935709-7936410 bp Feature: domain Description: DDE_Tnp_1_2 Location: 7936123-7936408 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 79361 23-7936408 bp Feature: gene Location: 7936158-7936544 bp Feature: domain Description: DUF4096 Location: 7936161-7936353 bp Feature: domain Description: DUF4096 Location: 79361 61 -7936353 bp Feature: gene Location: 7936653-7937642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7936656-7937256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7936656-7937256 bp Feature: domain Description: GIIM Note: maturase Location: 7937337-7937568 bp Feature: domain Description: GIIM Note: maturase Location: 7937337-7937568 bp Feature: gene Location: 7937798-7939018 bp Feature: domain Description: DDE_5 Location: 7937819-7938632 bp Feature: domain Description: DDE_5 Location: 793781 9-7938632 bp Feature: gene Location: 7939198-7940157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7939243-7939771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7939243-7939771 bp Feature: domain Description: GIIM Note: maturase Location: 7939852-7940083 bp Feature: domain Description: GIIM Note: maturase Location: 7939852-7940083 bp Feature: gene Location: 7940220-7941023 bp Feature: domain Description: IstB_IS21 Location: 7940430-7940937 bp Feature: domain Description: IstB_IS21 Location: 7940430-7940937 bp Feature: gene Location: 7941020-7942570 bp Feature: domain Description: HTH_38 Location: 7941026-7941152 bp Feature: domain Description: HTH_38 Location: 7941 026-7941 1 52 bp Feature: domain Description: COG4584 Location: 7941353-7941950 bp Feature: domain Description: COG4584 Location: 7941 353-7941 950 bp Feature: gene Location: 8277792-8279141 bp Feature: gene Location: 8280320-8281837 bp Feature: gene Location: 8281975-8283300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8282170-8282866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82821 70-8282866 bp Feature: domain Description: GIIM Note: maturase Location: 8282935-8283160 bp Feature: domain Description: GIIM Note: maturase Location: 8282935-82831 60 bp Feature: gene Location: 8283573-8284022 bp Feature: gene Location: 8284057-8287791 bp Feature: domain Description: Peptidase_C14 Location: 8284081-8284774 bp Feature: domain Description: Peptidase_C1 4 Location: 8284081 -8284774 bp Feature: domain Description: KOG1803 Location: 8285650-8285974 bp Feature: domain Description: KOG1 803 Location: 8285650-8285974 bp Feature: domain Description: KOG1803 Location: 8286607-8287375 bp Feature: domain Description: KOG1 803 Location: 8286607-8287375 bp Feature: gene Location: 8287788-8288183 bp Feature: gene Location: 8288709-8289218 bp Feature: gene Location: 8289591-8291063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8289933-8290629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8289933-8290629 bp Feature: domain Description: GIIM Note: maturase Location: 8290698-8290923 bp Feature: domain Description: GIIM Note: maturase Location: 8290698-8290923 bp Feature: gene Location: 8291754-8292377 bp Feature: domain Description: zf-ISL3 Location: 8291859-8291988 bp Feature: domain Description: zf-ISL3 Location: 8291 859-8291 988 bp Feature: gene Location: 8292533-8293060 bp Feature: gene Location: 8332441-8333526 bp Feature: domain Description: HTH_32 Location: 8332696-8332894 bp Feature: domain Description: HTH_32 Location: 8332696-8332894 bp Feature: domain Description: rve_3 Location: 8333230-8333422 bp Feature: domain Description: rve_3 Location: 8333230-8333422 bp Feature: gene Location: 8333854-8335140 bp Feature: domain Description: DDE_5 Location: 8333941-8334754 bp Feature: domain Description: DDE_5 Location: 8333941 -8334754 bp Feature: gene Location: 8335230-8336636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8335590-8336250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8335590-8336250 bp Feature: domain Description: GIIM Note: maturase Location: 8336331-8336562 bp Feature: domain Description: GIIM Note: maturase Location: 8336331 -8336562 bp Feature: gene Location: 8337105-8338346 bp Feature: domain Description: HTH_32 Location: 8337198-8337351 bp Feature: domain Description: HTH_32 Location: 83371 98-8337351 bp Feature: domain Description: HTH_32 Location: 8337444-8337657 bp Feature: domain Description: HTH_32 Location: 8337444-8337657 bp Feature: domain Description: DDE_3 Location: 8337780-8338212 bp Feature: domain Description: DDE_3 Location: 8337780-833821 2 bp Feature: gene Location: 8338473-8346731 bp Feature: domain Description: ABC_SMC_barmotin Location: 8342256-8345271 bp Feature: domain Description: ABC_SMC_barmotin Location: 8342256-8345271 bp Feature: domain Description: LGIC_TM_nAChR Location: 8344428-8344428 bp Feature: domain Description: LGIC_TM_nAChR Location: 8344428-8344428 bp Feature: gene Location: 8805481-8805981 bp Feature: domain Description: COG5659 Location: 8805505-8805964 bp Feature: domain Description: COG5659 Location: 8805505-8805964 bp Feature: gene Location: 8806072-8807313 bp Feature: domain Description: HTH_32 Location: 8806165-8806318 bp Feature: domain Description: HTH_32 Location: 88061 65-880631 8 bp Feature: domain Description: HTH_32 Location: 8806411-8806624 bp Feature: domain Description: HTH_32 Location: 880641 1 -8806624 bp Feature: domain Description: DDE_3 Location: 8806747-8807179 bp Feature: domain Description: DDE_3 Location: 8806747-88071 79 bp Feature: gene Location: 8807529-8808935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8807889-8808549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8807889-8808549 bp Feature: domain Description: GIIM Note: maturase Location: 8808630-8808861 bp Feature: domain Description: GIIM Note: maturase Location: 8808630-8808861 bp Feature: gene Location: 8809381-8810085 bp Feature: domain Description: DDE_5 Location: 8809633-8810059 bp Feature: domain Description: DDE_5 Location: 8809633-881 0059 bp Feature: gene Location: 8809835-8810137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), PHZA_PHZB (pfam03284), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), DDE_Tnp_4 (pfam13359), ALDH_KGSADH (cd07129), HTH_32 (pfam13565), DDE_3 (pfam13358), RVT_N (pfam13655)
DDE_5 (pfam13546), Peptidase_C39_2 (pfam13529), PEP_mutase (TIGR02320), AXO (cd01150), LysR (COG0583), Penicil_amidase (pfam01804), M20_Acy1-like (cd08660), RsdA_SigD_bd (pfam16751), GlcD (COG0277), GlpC (COG0247)
IS5 (COG3039), PRK02186 (argininosuccinate lyase; Provisional), eno (TIGR01060), Sialidase_non-viral (cd15482), COG5659 (SRSO17 transposase ), DDE_Tnp_1_2 (pfam13586), DUF4096 (pfam13340), IstB_IS21 (pfam01695), HTH_38 (pfam13936), COG4584 (Transposase )
Peptidase_C14 (pfam00656), KOG1803 (KOG1803, DNA helicase ), zf-ISL3 (pfam14690), rve_3 (pfam13683), ABC_SMC_barmotin (cd03278), LGIC_TM_nAChR (cd19064)