myRT

myRT report for GCA_014490535.1_ASM1449053v1

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Seq: CP061030.1 Staphylococcus pseudintermedius strain Z0118SP0108 chromosome, complete genome (2663261 bp)
Overview 1 RT 1: 119923-129044 bp 2 RT 2: 139356-143010 bp 3 RT 3: 616294-622203 bp 4 RT 4: 840419-845173 bp 5 RT 5: 1082981-1090165 bp 6 RT 6: 1253313-1258268 bp 7 RT 7: 1486787-1490189 bp 8 RT 8: 1534118-1536926 bp 9 RT 9: 1835077-1838754 bp 10 RT 10: 1889622-1894269 bp 11 RT 11: 1999442-2003161 bp 12 RT 12: 2032688-2039785 bp 13 RT 13: 2274500-2278230 bp Neighborhood of RT #1 [119923, 129109] RVT-GII GIIM PRK11883 PRK12435 hemE HmoA RVT-GII GIIM EcsB Neighborhood of RT #2 [139356, 143010] PRK13676 YheB RVT-GII GIIM Neighborhood of RT #3 [616294, 622203] DUF3139 M20_ArgE_RocB RVT-GII GIIM NarK Neighborhood of RT #4 [840419, 845190] Dcm RVT-GII GIIM PhoA Neighborhood of RT #5 [1082981, 1090353] YeiB RVT-UG2 met_A_Alw26 Eco57I TaqI_C Neighborhood of RT #6 [1253313, 1258294] PenP RVT-GII GIIM HmoA AraJ Neighborhood of RT #7 [1486787, 1490203] RVT-GII GIIM ABCF_EF-3 Neighborhood of RT #8 [1534118, 1536931] RVT-GII GIIM eMpr Neighborhood of RT #9 [1835077, 1838762] PRK13673 RVT-GII GIIM PRK13512 Neighborhood of RT #10 [1889622, 1894269] CcmA RVT-GII GIIM PRK09183 Neighborhood of RT #11 [1999442, 2003184] TrkA RVT-GII LysA Neighborhood of RT #12 [2032688, 2039796] FtsW RVT-GII GIIM COG3860 PycA Neighborhood of RT #13 [2274500, 2278230] SNase RVT-GII GIIM Feature: gene Location: 119923-120057 bp Feature: gene Location: 120226-120384 bp Feature: gene Location: 120486-121781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120711-121323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2071 1 -1 21 323 bp Feature: domain Description: GIIM Note: maturase Location: 121386-121617 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 386-1 21 61 7 bp Feature: gene Location: 121859-123262 bp Feature: domain Description: PRK11883 Location: 121868-123251 bp Feature: domain Description: PRK1 1 883 Location: 1 21 868-1 23251 bp Feature: gene Location: 123268-124200 bp Feature: domain Description: PRK12435 Location: 123271-124189 bp Feature: domain Description: PRK1 2435 Location: 1 23271 -1 241 89 bp Feature: gene Location: 124238-125296 bp Feature: domain Description: hemE Location: 124274-125288 bp Feature: domain Description: hemE Location: 1 24274-1 25288 bp Feature: gene Location: 125556-126095 bp Feature: domain Description: HmoA Location: 125799-126018 bp Feature: domain Description: HmoA Location: 1 25799-1 2601 8 bp Feature: gene Location: 126163-127458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126388-127000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26388-1 27000 bp Feature: domain Description: GIIM Note: maturase Location: 127063-127294 bp Feature: domain Description: GIIM Note: maturase Location: 1 27063-1 27294 bp Feature: gene Location: 127560-127718 bp Feature: gene Location: 127991-129109 bp Feature: domain Description: EcsB Location: 127997-129044 bp Feature: domain Description: EcsB Location: 1 27997-1 29044 bp Feature: gene Location: 139356-139700 bp Feature: domain Description: PRK13676 Location: 139359-139695 bp Feature: domain Description: PRK1 3676 Location: 1 39359-1 39695 bp Feature: gene Location: 139789-140919 bp Feature: domain Description: YheB Location: 139792-140917 bp Feature: domain Description: YheB Location: 1 39792-1 4091 7 bp Feature: gene Location: 141158-142453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141383-141995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 383-1 41 995 bp Feature: domain Description: GIIM Note: maturase Location: 142058-142289 bp Feature: domain Description: GIIM Note: maturase Location: 1 42058-1 42289 bp Feature: gene Location: 142555-142713 bp Feature: gene Location: 142819-143010 bp Feature: gene Location: 616294-616665 bp Feature: domain Description: DUF3139 Location: 616318-616549 bp Feature: domain Description: DUF31 39 Location: 61 631 8-61 6549 bp Feature: gene Location: 616801-618432 bp Feature: domain Description: M20_ArgE_RocB Location: 616870-618421 bp Feature: domain Description: M20_ArgE_RocB Location: 61 6870-61 8421 bp Feature: gene Location: 618540-619835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618765-619377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 8765-61 9377 bp Feature: domain Description: GIIM Note: maturase Location: 619440-619671 bp Feature: domain Description: GIIM Note: maturase Location: 61 9440-61 9671 bp Feature: gene Location: 620416-621594 bp Feature: domain Description: NarK Location: 620431-621574 bp Feature: domain Description: NarK Location: 620431 -621 574 bp Feature: gene Location: 622027-622203 bp Feature: gene Location: 840419-841567 bp Feature: domain Description: Dcm Location: 840422-841559 bp Feature: domain Description: Dcm Location: 840422-841 559 bp Feature: gene Location: 841908-842087 bp Feature: gene Location: 842152-843075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842248-842863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842248-842863 bp Feature: domain Description: GIIM Note: maturase Location: 842926-843040 bp Feature: domain Description: GIIM Note: maturase Location: 842926-843040 bp Feature: gene Location: 843530-843712 bp Feature: gene Location: 843751-845190 bp Feature: domain Description: PhoA Location: 843772-845173 bp Feature: domain Description: PhoA Location: 843772-8451 73 bp Feature: gene Location: 1082981-1083166 bp Feature: gene Location: 1083331-1084548 bp Feature: domain Description: YeiB Location: 1083367-1084534 bp Feature: domain Description: YeiB Location: 1 083367-1 084534 bp Feature: gene Location: 1085133-1086449 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1085313-1086129 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 08531 3-1 0861 29 bp Feature: gene Location: 1086409-1086675 bp Feature: gene Location: 1087048-1090353 bp Feature: domain Description: met_A_Alw26 Location: 1088323-1088440 bp Feature: domain Description: met_A_Alw26 Location: 1 088323-1 088440 bp Feature: domain Description: Eco57I Location: 1089172-1089493 bp Feature: domain Description: Eco57I Location: 1 0891 72-1 089493 bp Feature: domain Description: TaqI_C Location: 1089811-1090165 bp Feature: domain Description: TaqI_C Location: 1 08981 1 -1 0901 65 bp Feature: gene Location: 1253313-1254200 bp Feature: domain Description: PenP Location: 1253367-1254192 bp Feature: domain Description: PenP Location: 1 253367-1 2541 92 bp Feature: gene Location: 1254384-1254527 bp Feature: gene Location: 1254958-1256253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255183-1255795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2551 83-1 255795 bp Feature: domain Description: GIIM Note: maturase Location: 1255858-1256089 bp Feature: domain Description: GIIM Note: maturase Location: 1 255858-1 256089 bp Feature: gene Location: 1256405-1256833 bp Feature: domain Description: HmoA Location: 1256537-1256759 bp Feature: domain Description: HmoA Location: 1 256537-1 256759 bp Feature: gene Location: 1257077-1258294 bp Feature: domain Description: AraJ Location: 1257125-1258268 bp Feature: domain Description: AraJ Location: 1 2571 25-1 258268 bp Feature: gene Location: 1486787-1486939 bp Feature: gene Location: 1486956-1487114 bp Feature: gene Location: 1487216-1488448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1487441-1488053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 487441 -1 488053 bp Feature: domain Description: GIIM Note: maturase Location: 1488116-1488347 bp Feature: domain Description: GIIM Note: maturase Location: 1 4881 1 6-1 488347 bp Feature: gene Location: 1489488-1489655 bp Feature: gene Location: 1489739-1490203 bp Feature: domain Description: ABCF_EF-3 Location: 1489745-1490189 bp Feature: domain Description: ABCF_EF-3 Location: 1 489745-1 4901 89 bp Feature: gene Location: 1534118-1534273 bp Feature: gene Location: 1534379-1534537 bp Feature: gene Location: 1534639-1535379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534864-1535293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 534864-1 535293 bp Feature: gene Location: 1535421-1535933 bp Feature: domain Description: GIIM Note: maturase Location: 1535538-1535769 bp Feature: domain Description: GIIM Note: maturase Location: 1 535538-1 535769 bp Feature: gene Location: 1536206-1536931 bp Feature: domain Description: eMpr Location: 1536338-1536926 bp Feature: domain Description: eMpr Location: 1 536338-1 536926 bp Feature: gene Location: 1835077-1835466 bp Feature: domain Description: PRK13673 Location: 1835089-1835443 bp Feature: domain Description: PRK1 3673 Location: 1 835089-1 835443 bp Feature: gene Location: 1835804-1835962 bp Feature: gene Location: 1836064-1836804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836289-1836718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 836289-1 83671 8 bp Feature: gene Location: 1836846-1837358 bp Feature: domain Description: GIIM Note: maturase Location: 1836963-1837194 bp Feature: domain Description: GIIM Note: maturase Location: 1 836963-1 8371 94 bp Feature: gene Location: 1837437-1838762 bp Feature: domain Description: PRK13512 Location: 1837446-1838754 bp Feature: domain Description: PRK1 351 2 Location: 1 837446-1 838754 bp Feature: gene Location: 1889622-1890503 bp Feature: domain Description: CcmA Location: 1889628-1890444 bp Feature: domain Description: CcmA Location: 1 889628-1 890444 bp Feature: gene Location: 1890505-1891260 bp Feature: gene Location: 1891434-1892684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1891659-1892271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 891 659-1 892271 bp Feature: domain Description: GIIM Note: maturase Location: 1892334-1892565 bp Feature: domain Description: GIIM Note: maturase Location: 1 892334-1 892565 bp Feature: gene Location: 1893062-1893436 bp Feature: domain Description: PRK09183 Location: 1893179-1893425 bp Feature: domain Description: PRK091 83 Location: 1 8931 79-1 893425 bp Feature: gene Location: 1894141-1894269 bp Feature: gene Location: 1999442-2000101 bp Feature: domain Description: TrkA Location: 1999451-2000093 bp Feature: domain Description: TrkA Location: 1 999451 -2000093 bp Feature: gene Location: 2000380-2000538 bp Feature: gene Location: 2000640-2001635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2000865-2001480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2000865-2001 480 bp Feature: gene Location: 2001756-2001935 bp Feature: gene Location: 2002093-2003184 bp Feature: domain Description: LysA Location: 2002129-2003161 bp Feature: domain Description: LysA Location: 20021 29-20031 61 bp Feature: gene Location: 2032688-2033920 bp Feature: domain Description: FtsW Location: 2032727-2033867 bp Feature: domain Description: FtsW Location: 2032727-2033867 bp Feature: gene Location: 2034242-2034400 bp Feature: gene Location: 2034502-2035797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034727-2035339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034727-2035339 bp Feature: domain Description: GIIM Note: maturase Location: 2035402-2035633 bp Feature: domain Description: GIIM Note: maturase Location: 2035402-2035633 bp Feature: gene Location: 2035966-2036148 bp Feature: domain Description: COG3860 Location: 2035981-2036101 bp Feature: domain Description: COG3860 Location: 2035981 -20361 01 bp Feature: gene Location: 2036347-2039796 bp Feature: domain Description: PycA Location: 2036353-2039785 bp Feature: domain Description: PycA Location: 2036353-2039785 bp Feature: gene Location: 2274500-2275006 bp Feature: domain Description: SNase Location: 2274686-2275001 bp Feature: domain Description: SNase Location: 2274686-2275001 bp Feature: gene Location: 2275293-2275451 bp Feature: gene Location: 2275669-2276847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275777-2276389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275777-2276389 bp Feature: domain Description: GIIM Note: maturase Location: 2276452-2276683 bp Feature: domain Description: GIIM Note: maturase Location: 2276452-2276683 bp Feature: gene Location: 2276937-2277806 bp Feature: gene Location: 2278099-2278230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11883 (protoporphyrinogen oxidase; Reviewed), PRK12435 (ferrochelatase; Provisional), hemE (TIGR01464), HmoA (COG2329), EcsB (pfam05975), PRK13676 (YlbF/YmcA family competence regulator), YheB (COG4399), DUF3139 (pfam11337)
M20_ArgE_RocB (cd05654), NarK (COG2223), Dcm (COG0270), PhoA (COG1785), YeiB (COG2311), RVT-UG2, met_A_Alw26 (TIGR02987), Eco57I (pfam07669), TaqI_C (pfam12950), PenP (COG2367)
AraJ (COG2814), ABCF_EF-3 (cd03221), eMpr (COG3591), PRK13673 (hypothetical protein; Provisional), PRK13512 (coenzyme A disulfide reductase; Provisional), CcmA (COG4133), PRK09183 (transposase/IS protein; Provisional), TrkA (COG0569), LysA (COG0019), FtsW (COG0772)
COG3860 (Uncharacterized protein, DUF2087 family ), PycA (COG1038), SNase (pfam00565)