myRT

myRT report for GCA_014623465.1_ASM1462346v1

Download annotations/find similar RTs

Seq: CP061081.1 Marinomonas arctica strain BSI20414 chromosome, complete genome (4540024 bp)
Overview 1 RT 1: 600113-605008 bp 2 RT 2: 1438030-1443015 bp 3 RT 3: 2240802-2246528 bp 4 RT 4: 3657580-3664690 bp 5 RT 5: 4164606-4170451 bp 6 RT 6: 4176970-4182342 bp Neighborhood of RT #1 [600113, 605016] HTH_37 RVT-GII GIIM DUF2971 int Neighborhood of RT #2 [1438030, 1443062] PBP2_TRAP_Dctp3_4 RVT-GII GIIM PRK07044 LysR Neighborhood of RT #3 [2240802, 2246554] PRK05506 PRK12563 RVT-GII GIIM SMC_prok_B Neighborhood of RT #4 [3657580, 3664701] M20_Acy1-like Cache_2 Tar RVT-GII GIIM PRK00855 Neighborhood of RT #5 [4164606, 4170489] COG3943 LysR RVT-GII GIIM ALDH_KGSADH Neighborhood of RT #6 [4176970, 4182392] XylF RosB RosB TrkA_N RVT-GII GIIM antidote_HigA Feature: gene Location: 600113-600415 bp Ori: QNT06599.1 Feature: domain Description: HTH_37 Location: 600173-600377 bp Feature: domain Description: HTH_37 Location: 6001 73-600377 bp Feature: gene Location: 601041-601244 bp Feature: gene Location: 601429-602763 bp Ori: QNT06600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601693-602314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601 693-60231 4 bp Feature: domain Description: GIIM Note: maturase Location: 602365-602581 bp Feature: domain Description: GIIM Note: maturase Location: 602365-602581 bp Feature: gene Location: 603088-603996 bp Ori: QNT06601.1 Feature: domain Description: DUF2971 Location: 603451-603763 bp Feature: domain Description: DUF2971 Location: 603451 -603763 bp Feature: gene Location: 604009-605016 bp Ori: QNT06602.1 Feature: domain Description: int Location: 604012-605008 bp Feature: domain Description: int Location: 60401 2-605008 bp Feature: gene Location: 1438030-1439058 bp Ori: QNT07298.1 Feature: domain Description: PBP2_TRAP_Dctp3_4 Location: 1438117-1439020 bp Feature: domain Description: PBP2_TRAP_Dctp3_4 Location: 1 4381 1 7-1 439020 bp Feature: gene Location: 1439416-1439619 bp Feature: gene Location: 1439805-1441139 bp Ori: QNT07299.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440069-1440690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 440069-1 440690 bp Feature: domain Description: GIIM Note: maturase Location: 1440741-1440957 bp Feature: domain Description: GIIM Note: maturase Location: 1 440741 -1 440957 bp Feature: gene Location: 1441227-1441997 bp Ori: QNT07300.1 Feature: domain Description: PRK07044 Location: 1441251-1441995 bp Feature: domain Description: PRK07044 Location: 1 441 251 -1 441 995 bp Feature: gene Location: 1442112-1443062 bp Ori: QNT07301.1 Feature: domain Description: LysR Location: 1442115-1443015 bp Feature: domain Description: LysR Location: 1 4421 1 5-1 44301 5 bp Feature: gene Location: 2240802-2242415 bp Ori: QNT07941.1 Gene: cysN Feature: domain Description: PRK05506 Location: 2240805-2242254 bp Feature: domain Description: PRK05506 Location: 2240805-2242254 bp Feature: gene Location: 2242434-2243339 bp Ori: QNT07942.1 Gene: cysD Feature: domain Description: PRK12563 Location: 2242443-2243337 bp Feature: domain Description: PRK1 2563 Location: 2242443-2243337 bp Feature: gene Location: 2243590-2244924 bp Ori: QNT07943.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2243854-2244475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2243854-2244475 bp Feature: domain Description: GIIM Note: maturase Location: 2244526-2244742 bp Feature: domain Description: GIIM Note: maturase Location: 2244526-2244742 bp Feature: gene Location: 2245110-2245313 bp Feature: gene Location: 2245655-2246554 bp Ori: QNT07944.1 Feature: domain Description: SMC_prok_B Location: 2245886-2246528 bp Feature: domain Description: SMC_prok_B Location: 2245886-2246528 bp Feature: gene Location: 3657580-3658734 bp Ori: QNT05343.1 Feature: domain Description: M20_Acy1-like Location: 3657598-3658717 bp Feature: domain Description: M20_Acy1 -like Location: 3657598-365871 7 bp Feature: gene Location: 3659063-3660685 bp Ori: QNT05344.1 Feature: domain Description: Cache_2 Location: 3659180-3659432 bp Feature: domain Description: Cache_2 Location: 36591 80-3659432 bp Feature: domain Description: Tar Location: 3659570-3660680 bp Feature: domain Description: Tar Location: 3659570-3660680 bp Feature: gene Location: 3660788-3662122 bp Ori: QNT05345.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661052-3661673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661 052-3661 673 bp Feature: domain Description: GIIM Note: maturase Location: 3661724-3661940 bp Feature: domain Description: GIIM Note: maturase Location: 3661 724-3661 940 bp Feature: gene Location: 3662307-3662510 bp Feature: gene Location: 3663301-3664701 bp Ori: QNT05346.1 Gene: argH Feature: domain Description: PRK00855 Location: 3663325-3664690 bp Feature: domain Description: PRK00855 Location: 3663325-3664690 bp Feature: gene Location: 4164606-4165610 bp Ori: QNT05774.1 Feature: domain Description: COG3943 Location: 4164615-4165578 bp Feature: domain Description: COG3943 Location: 41 6461 5-41 65578 bp Feature: gene Location: 4165874-4166836 bp Ori: QNT05775.1 Feature: domain Description: LysR Location: 4165904-4166801 bp Feature: domain Description: LysR Location: 41 65904-41 66801 bp Feature: gene Location: 4166892-4168226 bp Ori: QNT05776.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167156-4167777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 671 56-41 67777 bp Feature: domain Description: GIIM Note: maturase Location: 4167828-4168044 bp Feature: domain Description: GIIM Note: maturase Location: 41 67828-41 68044 bp Feature: gene Location: 4168411-4168614 bp Feature: gene Location: 4168981-4170489 bp Ori: QNT05777.1 Feature: domain Description: ALDH_KGSADH Location: 4169098-4170451 bp Feature: domain Description: ALDH_KGSADH Location: 41 69098-41 70451 bp Feature: gene Location: 4176970-4178031 bp Ori: QNT05783.1 Feature: domain Description: XylF Location: 4177000-4178026 bp Feature: domain Description: XylF Location: 41 77000-41 78026 bp Feature: gene Location: 4178324-4179910 bp Ori: QNT05784.1 Feature: domain Description: RosB Location: 4178339-4178813 bp Feature: domain Description: RosB Location: 41 78339-41 7881 3 bp Feature: domain Description: RosB Location: 4178816-4179425 bp Feature: domain Description: RosB Location: 41 7881 6-41 79425 bp Feature: domain Description: TrkA_N Location: 4179485-4179830 bp Feature: domain Description: TrkA_N Location: 41 79485-41 79830 bp Feature: gene Location: 4180003-4181337 bp Ori: QNT05785.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180267-4180888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 80267-41 80888 bp Feature: domain Description: GIIM Note: maturase Location: 4180939-4181155 bp Feature: domain Description: GIIM Note: maturase Location: 41 80939-41 81 1 55 bp Feature: gene Location: 4181523-4181726 bp Feature: gene Location: 4182096-4182392 bp Ori: QNT05786.1 Feature: domain Description: antidote_HigA Location: 4182114-4182342 bp Feature: domain Description: antidote_HigA Location: 41 821 1 4-41 82342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_37 (pfam13744), RVT-GII, GIIM (pfam08388), DUF2971 (pfam11185), int (PHA02601), PBP2_TRAP_Dctp3_4 (cd13665), PRK07044 (aldolase II superfamily protein; Provisional), LysR (COG0583), PRK05506 (bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional), PRK12563 (sulfate adenylyltransferase subunit CysD)
SMC_prok_B (TIGR02168), M20_Acy1-like (cd08660), Cache_2 (smart01049), Tar (COG0840), PRK00855 (argininosuccinate lyase; Provisional), COG3943 (Uncharacterized conserved protein ), ALDH_KGSADH (cd07129), XylF (COG4213), RosB (COG4651), TrkA_N (pfam02254)
antidote_HigA (TIGR02607)