myRT

myRT report for GCA_014672795.1_ASM1467279v1

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Seq: CP059852.1 Pseudomonas aeruginosa strain ZM03 chromosome, complete genome (6939908 bp)
Overview 1 RT 1: 3073736-3079376 bp 2 RT 2: 3251129-3254922 bp 3 RT 3: 3613728-3624025 bp 4 RT 4: 4590265-4595388 bp Neighborhood of RT #1 [3073736, 3079459] RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #2 [3251129, 3254930] PMBR RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Inovirus_Gp2 Neighborhood of RT #3 [3613728, 3624036] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Neighborhood of RT #4 [4590265, 4595396] RpmB rpmG RVT_N RVT-GII YkfC HNHc COG3450 PRK13360 Feature: gene Location: 3073736-3073996 bp Feature: gene Location: 3075080-3075259 bp Feature: gene Location: 3075991-3077259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3076204-3076861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3076204-3076861 bp Feature: domain Description: GIIM Note: maturase Location: 3076939-3077161 bp Feature: domain Description: GIIM Note: maturase Location: 3076939-30771 61 bp Feature: gene Location: 3077648-3078289 bp Feature: domain Description: DUF772 Location: 3077798-3077993 bp Feature: domain Description: DUF772 Location: 3077798-3077993 bp Feature: gene Location: 3078632-3079459 bp Feature: domain Description: ABC_phnC Location: 3078662-3079376 bp Feature: domain Description: ABC_phnC Location: 3078662-3079376 bp Feature: gene Location: 3251129-3251443 bp Feature: domain Description: PMBR Location: 3251282-3251357 bp Feature: domain Description: PMBR Location: 3251 282-3251 357 bp Feature: gene Location: 3251452-3251817 bp Feature: gene Location: 3251939-3253225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3252143-3252833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32521 43-3252833 bp Feature: gene Location: 3253806-3254132 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3253890-3253974 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3253890-3253974 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3253995-3254106 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3253995-32541 06 bp Feature: gene Location: 3254232-3254930 bp Feature: domain Description: Inovirus_Gp2 Location: 3254379-3254922 bp Feature: domain Description: Inovirus_Gp2 Location: 3254379-3254922 bp Feature: gene Location: 3613728-3615581 bp Feature: domain Description: PRK05658 Location: 3613740-3615579 bp Feature: domain Description: PRK05658 Location: 361 3740-361 5579 bp Feature: gene Location: 3615688-3619425 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3615796-3616453 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 361 5796-361 6453 bp Feature: domain Description: PRK09776 Location: 3616666-3617137 bp Feature: domain Description: PRK09776 Location: 361 6666-361 71 37 bp Feature: domain Description: PAS Location: 3617182-3617719 bp Feature: domain Description: PAS Location: 361 71 82-361 771 9 bp Feature: domain Description: PRK10060 Location: 3617728-3619375 bp Feature: domain Description: PRK1 0060 Location: 361 7728-361 9375 bp Feature: gene Location: 3620506-3622191 bp Feature: domain Description: RVT_N Location: 3620563-3620803 bp Feature: domain Description: RVT_N Location: 3620563-3620803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3620851-3621487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3620851 -3621 487 bp Feature: domain Description: GIIM Note: maturase Location: 3621541-3621772 bp Feature: domain Description: GIIM Note: maturase Location: 3621 541 -3621 772 bp Feature: domain Description: HNH Note: nucleases Location: 3622024-3622162 bp Feature: domain Description: HNH Note: nucleases Location: 3622024-36221 62 bp Feature: gene Location: 3622519-3622656 bp Feature: gene Location: 3622915-3624036 bp Feature: domain Description: COG3177 Location: 3622933-3624025 bp Feature: domain Description: COG31 77 Location: 3622933-3624025 bp Feature: gene Location: 4590265-4590501 bp Feature: domain Description: RpmB Location: 4590268-4590490 bp Feature: domain Description: RpmB Location: 4590268-4590490 bp Feature: gene Location: 4590513-4590668 bp Feature: domain Description: rpmG Location: 4590516-4590660 bp Feature: domain Description: rpmG Location: 459051 6-4590660 bp Feature: gene Location: 4591729-4593435 bp Feature: domain Description: RVT_N Location: 4591786-4592026 bp Feature: domain Description: RVT_N Location: 4591 786-4592026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4592074-4592710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4592074-459271 0 bp Feature: domain Description: YkfC Location: 4592932-4593076 bp Feature: domain Description: YkfC Location: 4592932-4593076 bp Feature: domain Description: HNHc Note: nucleases Location: 4593205-4593379 bp Feature: domain Description: HNHc Note: nucleases Location: 4593205-4593379 bp Feature: gene Location: 4593639-4594001 bp Feature: domain Description: COG3450 Location: 4593642-4593987 bp Feature: domain Description: COG3450 Location: 4593642-4593987 bp Feature: gene Location: 4594068-4595396 bp Feature: domain Description: PRK13360 Location: 4594074-4595388 bp Feature: domain Description: PRK1 3360 Location: 4594074-4595388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315), PMBR (pfam09373), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Inovirus_Gp2 (pfam11726), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), HNH (pfam01844), COG3177 (Fic family protein ), RpmB (COG0227), rpmG (PRK00595), YkfC (COG3344), HNHc (smart00507)
COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional)