myRT

myRT report for GCA_014697215.1_ASM1469721v1

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Seq: CP031142.1 Saccharopolyspora pogona strain NRRL30141 chromosome, complete genome (9436548 bp)
Overview 1 RT 1: 1363824-1372540 bp 2 RT 2: 1428619-1431372 bp 3 RT 3: 2064829-2070341 bp 4 RT 4: 2143696-2146430 bp 5 RT 5: 2559752-2567781 bp 6 RT 6: 2643633-2653982 bp 7 RT 7: 2777203-2782006 bp 8 RT 8: 3906165-3909364 bp 9 RT 9: 4080614-4087292 bp 10 RT 10: 4646217-4653263 bp 11 RT 11: 5415966-5422211 bp 12 RT 12: 8984695-8989311 bp Neighborhood of RT #1 [1363824, 1372599] HTH_29 HTH_XRE DDE_3 fadB RVT-GII Intron_maturas2 SsuD SsuD Neighborhood of RT #2 [1428619, 1431372] PRK09776 PAS PRK09776 RVT-GII Neighborhood of RT #3 [2064829, 2070700] PinE Zn_ribbon_recom excise RVT-GII GIIM RVT-GII GIIM Transposase_20 DEDD_Tnp_IS110 Neighborhood of RT #4 [2143696, 2146435] DDE_Tnp_4 RVT-GII GIIM MFS_MMR_MDR_like CspC Neighborhood of RT #5 [2559752, 2567804] INT_tnpB_C_Tn554 DDE_3 RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM COG5659 Neighborhood of RT #6 [2643633, 2653987] FDH_like_ADH3 InsE RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like COG3464 RVT-GII Transposase_mut Transposase_mut Neighborhood of RT #7 [2777203, 2782023] RVT-GII RVT-GII GIIM PHA02517 InsE Neighborhood of RT #8 [3906165, 3909364] FixB RVT-GII HTH_32 rve_3 Neighborhood of RT #9 [4080614, 4087525] PLN02424 HTH_28 HTH_33 DDE_3 RVT-GII HTH_28 HTH_33 DDE_3 Transposase_mut Neighborhood of RT #10 [4646217, 4653263] PRK09054 PRK05718 RVT_N RVT-GII GIIM CE4_GLA_like_6s Neighborhood of RT #11 [5415966, 5422339] AarF DDE_5 RVT-GII GIIM Methyltransf_12 Whib Neighborhood of RT #12 [8984695, 8989358] RVT-GII HTH_30 Met_dep_hydrolase_A PucR Feature: gene Location: 1363824-1364885 bp Feature: domain Description: HTH_29 Location: 1363905-1364085 bp Feature: domain Description: HTH_29 Location: 1 363905-1 364085 bp Feature: domain Description: HTH_XRE Location: 1364130-1364193 bp Feature: domain Description: HTH_XRE Location: 1 3641 30-1 3641 93 bp Feature: domain Description: DDE_3 Location: 1364319-1364754 bp Feature: domain Description: DDE_3 Location: 1 36431 9-1 364754 bp Feature: gene Location: 1365151-1367217 bp Feature: domain Description: fadB Location: 1365211-1367155 bp Feature: domain Description: fadB Location: 1 36521 1 -1 3671 55 bp Feature: gene Location: 1368790-1369716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368859-1368991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 368859-1 368991 bp Feature: domain Description: Intron_maturas2 Location: 1369105-1369348 bp Feature: domain Description: Intron_maturas2 Location: 1 3691 05-1 369348 bp Feature: gene Location: 1370054-1371319 bp Feature: domain Description: SsuD Location: 1370261-1371290 bp Feature: domain Description: SsuD Location: 1 370261 -1 371 290 bp Feature: gene Location: 1371445-1372599 bp Feature: domain Description: SsuD Location: 1371520-1372540 bp Feature: domain Description: SsuD Location: 1 371 520-1 372540 bp Feature: gene Location: 1428619-1429857 bp Feature: domain Description: PRK09776 Location: 1428682-1429027 bp Feature: domain Description: PRK09776 Location: 1 428682-1 429027 bp Feature: domain Description: PAS Location: 1429045-1429330 bp Feature: domain Description: PAS Location: 1 429045-1 429330 bp Feature: domain Description: PRK09776 Location: 1429357-1429852 bp Feature: domain Description: PRK09776 Location: 1 429357-1 429852 bp Feature: gene Location: 1429672-1429806 bp Feature: gene Location: 1429967-1430386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1429970-1430258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 429970-1 430258 bp Feature: gene Location: 1430444-1430932 bp Feature: gene Location: 1431232-1431372 bp Feature: gene Location: 2064829-2065179 bp Feature: gene Location: 2065286-2067340 bp Feature: domain Description: PinE Location: 2065334-2065910 bp Feature: domain Description: PinE Location: 2065334-206591 0 bp Feature: domain Description: Zn_ribbon_recom Location: 2066276-2066441 bp Feature: domain Description: Zn_ribbon_recom Location: 2066276-2066441 bp Feature: domain Description: excise Location: 2067128-2067242 bp Feature: domain Description: excise Location: 20671 28-2067242 bp Feature: gene Location: 2067015-2068514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2067480-2068110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2067480-20681 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 2068188-2068410 bp Feature: domain Description: GIIM Note: maturase Location: 20681 88-206841 0 bp Feature: gene Location: 2068553-2068933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068571-2068727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068571 -2068727 bp Feature: domain Description: GIIM Note: maturase Location: 2068781-2068907 bp Feature: domain Description: GIIM Note: maturase Location: 2068781 -2068907 bp Feature: gene Location: 2069439-2069846 bp Feature: domain Description: Transposase_20 Location: 2069442-2069625 bp Feature: domain Description: Transposase_20 Location: 2069442-2069625 bp Feature: gene Location: 2069843-2070700 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2069894-2070341 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2069894-2070341 bp Feature: gene Location: 2143696-2144145 bp Feature: domain Description: DDE_Tnp_4 Location: 2143702-2144116 bp Feature: domain Description: DDE_Tnp_4 Location: 21 43702-21 441 1 6 bp Feature: gene Location: 2144227-2144397 bp Feature: gene Location: 2144895-2145587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2145042-2145174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 45042-21 451 74 bp Feature: domain Description: GIIM Note: maturase Location: 2145255-2145474 bp Feature: domain Description: GIIM Note: maturase Location: 21 45255-21 45474 bp Feature: gene Location: 2145584-2146138 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2145605-2146112 bp Feature: domain Description: MFS_MMR_MDR_like Location: 21 45605-21 461 1 2 bp Feature: gene Location: 2146232-2146435 bp Feature: domain Description: CspC Location: 2146235-2146430 bp Feature: domain Description: CspC Location: 21 46235-21 46430 bp Feature: gene Location: 2559752-2560984 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 2559977-2560496 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 2559977-2560496 bp Feature: gene Location: 2561510-2561845 bp Feature: domain Description: DDE_3 Location: 2561522-2561822 bp Feature: domain Description: DDE_3 Location: 2561 522-2561 822 bp Feature: gene Location: 2562823-2564661 bp Feature: domain Description: RVT_N Location: 2562940-2563168 bp Feature: domain Description: RVT_N Location: 2562940-25631 68 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2563237-2563891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2563237-2563891 bp Feature: domain Description: GIIM Note: maturase Location: 2563948-2564182 bp Feature: domain Description: GIIM Note: maturase Location: 2563948-25641 82 bp Feature: gene Location: 2565053-2566831 bp Feature: domain Description: RVT_N Location: 2565131-2565371 bp Feature: domain Description: RVT_N Location: 25651 31 -2565371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2565428-2566085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2565428-2566085 bp Feature: domain Description: GIIM Note: maturase Location: 2566145-2566376 bp Feature: domain Description: GIIM Note: maturase Location: 25661 45-2566376 bp Feature: gene Location: 2566828-2567118 bp Feature: gene Location: 2567229-2567804 bp Feature: domain Description: COG5659 Location: 2567316-2567781 bp Feature: domain Description: COG5659 Location: 256731 6-2567781 bp Feature: gene Location: 2643633-2644676 bp Feature: domain Description: FDH_like_ADH3 Location: 2643636-2644671 bp Feature: domain Description: FDH_like_ADH3 Location: 2643636-2644671 bp Feature: gene Location: 2644891-2645316 bp Feature: domain Description: InsE Location: 2644972-2645257 bp Feature: domain Description: InsE Location: 2644972-2645257 bp Feature: gene Location: 2645883-2646212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2645889-2646111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2645889-26461 1 1 bp Feature: gene Location: 2646234-2647238 bp Feature: domain Description: Phage_int_SAM_1 Location: 2646279-2646528 bp Feature: domain Description: Phage_int_SAM_1 Location: 2646279-2646528 bp Feature: domain Description: INT_RitC_C_like Location: 2646609-2647158 bp Feature: domain Description: INT_RitC_C_like Location: 2646609-26471 58 bp Feature: gene Location: 2647228-2648208 bp Feature: domain Description: INT_RitB_C_like Location: 2647606-2648140 bp Feature: domain Description: INT_RitB_C_like Location: 2647606-26481 40 bp Feature: gene Location: 2648205-2649185 bp Feature: domain Description: Phage_int_SAM_1 Location: 2648298-2648526 bp Feature: domain Description: Phage_int_SAM_1 Location: 2648298-2648526 bp Feature: domain Description: INT_RitA_C_like Location: 2648613-2649150 bp Feature: domain Description: INT_RitA_C_like Location: 264861 3-26491 50 bp Feature: gene Location: 2649333-2650634 bp Feature: domain Description: COG3464 Location: 2649381-2650599 bp Feature: domain Description: COG3464 Location: 2649381 -2650599 bp Feature: gene Location: 2650946-2651770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651267-2651654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651 267-2651 654 bp Feature: gene Location: 2652307-2652804 bp Feature: domain Description: Transposase_mut Location: 2652316-2652739 bp Feature: domain Description: Transposase_mut Location: 265231 6-2652739 bp Feature: gene Location: 2653358-2653987 bp Feature: domain Description: Transposase_mut Location: 2653421-2653982 bp Feature: domain Description: Transposase_mut Location: 2653421 -2653982 bp Feature: gene Location: 2777203-2777553 bp Feature: gene Location: 2777583-2777732 bp Feature: gene Location: 2777824-2778072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2777998-2778046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2777998-2778046 bp Feature: gene Location: 2778218-2779546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778221-2778818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778221 -277881 8 bp Feature: domain Description: GIIM Note: maturase Location: 2778914-2779148 bp Feature: domain Description: GIIM Note: maturase Location: 277891 4-27791 48 bp Feature: gene Location: 2780777-2781637 bp Feature: domain Description: PHA02517 Location: 2780798-2781602 bp Feature: domain Description: PHA0251 7 Location: 2780798-2781 602 bp Feature: gene Location: 2781682-2782023 bp Feature: domain Description: InsE Location: 2781706-2782006 bp Feature: domain Description: InsE Location: 2781 706-2782006 bp Feature: gene Location: 3906165-3906686 bp Feature: domain Description: FixB Location: 3906168-3906675 bp Feature: domain Description: FixB Location: 39061 68-3906675 bp Feature: gene Location: 3906980-3907327 bp Feature: gene Location: 3907437-3907997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3907698-3907878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3907698-3907878 bp Feature: gene Location: 3908045-3909082 bp Feature: domain Description: HTH_32 Location: 3908234-3908444 bp Feature: domain Description: HTH_32 Location: 3908234-3908444 bp Feature: domain Description: rve_3 Location: 3908777-3908972 bp Feature: domain Description: rve_3 Location: 3908777-3908972 bp Feature: gene Location: 3909092-3909364 bp Feature: gene Location: 4080614-4081801 bp Feature: domain Description: PLN02424 Location: 4080860-4081718 bp Feature: domain Description: PLN02424 Location: 4080860-4081 71 8 bp Feature: gene Location: 4082630-4083580 bp Feature: domain Description: HTH_28 Location: 4082636-4082750 bp Feature: domain Description: HTH_28 Location: 4082636-4082750 bp Feature: domain Description: HTH_33 Location: 4082849-4083014 bp Feature: domain Description: HTH_33 Location: 4082849-408301 4 bp Feature: domain Description: DDE_3 Location: 4083062-4083488 bp Feature: domain Description: DDE_3 Location: 4083062-4083488 bp Feature: gene Location: 4083905-4084801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4083986-4084616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4083986-408461 6 bp Feature: gene Location: 4084804-4085754 bp Feature: domain Description: HTH_28 Location: 4084810-4084924 bp Feature: domain Description: HTH_28 Location: 408481 0-4084924 bp Feature: domain Description: HTH_33 Location: 4085017-4085188 bp Feature: domain Description: HTH_33 Location: 408501 7-40851 88 bp Feature: domain Description: DDE_3 Location: 4085236-4085659 bp Feature: domain Description: DDE_3 Location: 4085236-4085659 bp Feature: gene Location: 4086233-4087525 bp Feature: domain Description: Transposase_mut Location: 4086296-4087292 bp Feature: domain Description: Transposase_mut Location: 4086296-4087292 bp Feature: gene Location: 4646217-4648064 bp Feature: domain Description: PRK09054 Location: 4646238-4648029 bp Feature: domain Description: PRK09054 Location: 4646238-4648029 bp Feature: gene Location: 4648204-4648851 bp Feature: domain Description: PRK05718 Location: 4648210-4648834 bp Feature: domain Description: PRK0571 8 Location: 464821 0-4648834 bp Feature: gene Location: 4649682-4651316 bp Feature: domain Description: RVT_N Location: 4649688-4649895 bp Feature: domain Description: RVT_N Location: 4649688-4649895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4649943-4650588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4649943-4650588 bp Feature: domain Description: GIIM Note: maturase Location: 4650684-4650918 bp Feature: domain Description: GIIM Note: maturase Location: 4650684-465091 8 bp Feature: gene Location: 4651613-4652977 bp Feature: domain Description: CE4_GLA_like_6s Location: 4651736-4652357 bp Feature: domain Description: CE4_GLA_like_6s Location: 4651 736-4652357 bp Feature: gene Location: 4653087-4653263 bp Feature: gene Location: 5415966-5417276 bp Feature: domain Description: AarF Location: 5415972-5417034 bp Feature: domain Description: AarF Location: 541 5972-541 7034 bp Feature: gene Location: 5417447-5418157 bp Feature: domain Description: DDE_5 Location: 5417456-5417831 bp Feature: domain Description: DDE_5 Location: 541 7456-541 7831 bp Feature: gene Location: 5418716-5420194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5419058-5419739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 9058-541 9739 bp Feature: domain Description: GIIM Note: maturase Location: 5419814-5420030 bp Feature: domain Description: GIIM Note: maturase Location: 541 981 4-5420030 bp Feature: gene Location: 5420612-5421490 bp Feature: domain Description: Methyltransf_12 Location: 5420750-5421068 bp Feature: domain Description: Methyltransf_1 2 Location: 5420750-5421 068 bp Feature: gene Location: 5421953-5422339 bp Feature: domain Description: Whib Location: 5422070-5422211 bp Feature: domain Description: Whib Location: 5422070-542221 1 bp Feature: gene Location: 8984695-8984925 bp Feature: gene Location: 8985323-8986189 bp Feature: gene Location: 8986186-8987337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8986294-8986984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8986294-8986984 bp Feature: domain Description: HTH_30 Location: 8987116-8987287 bp Feature: domain Description: HTH_30 Location: 89871 1 6-8987287 bp Feature: gene Location: 8987488-8988711 bp Feature: domain Description: Met_dep_hydrolase_A Location: 8987614-8988643 bp Feature: domain Description: Met_dep_hydrolase_A Location: 898761 4-8988643 bp Feature: gene Location: 8988747-8989358 bp Feature: domain Description: PucR Location: 8988789-8989311 bp Feature: domain Description: PucR Location: 8988789-898931 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_XRE (smart00530), DDE_3 (pfam13358), fadB (PRK11730), RVT-GII, Intron_maturas2 (pfam01348), SsuD (COG2141), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PinE (COG1961)
Zn_ribbon_recom (pfam13408), excise (TIGR01764), GIIM (pfam08388), Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548), DDE_Tnp_4 (pfam13359), MFS_MMR_MDR_like (cd17504), CspC (COG1278), INT_tnpB_C_Tn554 (cd01187), RVT_N (pfam13655)
COG5659 (SRSO17 transposase ), FDH_like_ADH3 (cd08287), InsE (COG2963), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), COG3464 (Transposase ), Transposase_mut (pfam00872), PHA02517 (putative transposase OrfB; Reviewed)
FixB (COG2025), HTH_32 (pfam13565), rve_3 (pfam13683), PLN02424 (ketopantoate hydroxymethyltransferase), HTH_28 (pfam13518), HTH_33 (pfam13592), PRK09054 (phosphogluconate dehydratase; Validated), PRK05718 (keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional), CE4_GLA_like_6s (cd10967), AarF (COG0661)
DDE_5 (pfam13546), Methyltransf_12 (pfam08242), Whib (pfam02467), HTH_30 (pfam13556), Met_dep_hydrolase_A (cd01299), PucR (pfam07905)