myRT

myRT report for GCA_900074915.1_PCPL58T

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Seq: LT222319.1 Pseudomonas sp. 58 isolate Sour cherry (Prunus cerasus) symptomatic leaf genome assembly, chromosome: 1 (5891735 bp)
Overview 1 RT 1: 6812-14687 bp 2 RT 2: 967051-975327 bp Neighborhood of RT #1 [6812, 14687] COG4889 RVT-Retrons Neighborhood of RT #2 [967051, 975327] GT4_MtfB-like GMP_PMI RVT-UG9 PRK14975 Feature: gene Location: 6812-11710 bp Ori: CZT26461.1 Feature: domain Description: COG4889 Location: 6815-11693 bp Feature: domain Description: COG4889 Location: 681 5-1 1 693 bp Feature: gene Location: 12120-12359 bp Feature: gene Location: 12402-13481 bp Ori: CZT26463.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12570-13137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2570-1 31 37 bp Feature: gene Location: 13493-13723 bp Feature: gene Location: 13890-14687 bp Feature: gene Location: 967051-968199 bp Ori: CZT27329.1 Feature: domain Description: GT4_MtfB-like Location: 967060-968167 bp Feature: domain Description: GT4_MtfB-like Location: 967060-9681 67 bp Feature: gene Location: 968476-969894 bp Ori: CZT27330.1 Gene: rfbA Feature: domain Description: GMP_PMI Location: 968485-969883 bp Feature: domain Description: GMP_PMI Location: 968485-969883 bp Feature: gene Location: 970950-972419 bp Ori: CZT27331.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 971337-971973 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 971 337-971 973 bp Feature: gene Location: 972989-974314 bp Ori: CZT27332.1 Feature: domain Description: PRK14975 Location: 973493-974243 bp Feature: domain Description: PRK1 4975 Location: 973493-974243 bp Feature: gene Location: 974719-975327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4889 (Predicted helicase ), RVT-Retrons, GT4_MtfB-like (cd03809), GMP_PMI (TIGR01479), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)

Seq: LT222317.1 Pseudomonas sp. 58 isolate Sour cherry (Prunus cerasus) symptomatic leaf genome assembly, plasmid: p58T5 (61794 bp)
Overview 1 RT 1: 7428-10683 bp Neighborhood of RT #1 [7428, 10683] Zn_Tnp_IS91 Y2_Tnp PRK10276 RVT-GII Feature: gene Location: 7428-7709 bp Feature: gene Location: 7690-8919 bp Ori: CZT26361.1 Feature: domain Description: Zn_Tnp_IS91 Location: 7774-8038 bp Feature: domain Description: Zn_Tnp_IS91 Location: 7774-8038 bp Feature: domain Description: Y2_Tnp Location: 8152-8686 bp Feature: domain Description: Y2 _Tnp Location: 8152 -8686 bp Feature: gene Location: 9032-10138 bp Ori: CZT26362.1 Feature: domain Description: PRK10276 Location: 9080-9293 bp Feature: domain Description: PRK102 76 Location: 9080-92 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9842-10073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9842 -10073 bp Feature: gene Location: 10400-10489 bp Feature: gene Location: 10489-10683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII