myRT

myRT report for GCA_900092355.1_P_veronii_1YdBTEX21

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Seq: LT599583.1 Pseudomonas veronii 1YdBTEX2 genome assembly, chromosome: PVE_r1 (6791257 bp)
Overview 1 RT 1: 2099874-2104996 bp Neighborhood of RT #1 [2099874, 2105013] Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 2099874-2100671 bp Feature: gene Location: 2100754-2102547 bp Ori: SBW79867.1 Feature: domain Description: Dcm Location: 2100781-2102440 bp Feature: domain Description: Dcm Location: 21 00781 -21 02440 bp Feature: gene Location: 2102616-2103776 bp Ori: SBW79868.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2102868-2103624 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 02868-21 03624 bp Feature: gene Location: 2103988-2104344 bp Ori: SBW79869.1 Feature: domain Description: Avd_like Location: 2104015-2104324 bp Feature: domain Description: Avd_like Location: 21 0401 5-21 04324 bp Feature: gene Location: 2104399-2105013 bp Ori: SBW79870.1 Feature: domain Description: DUF1566 Location: 2104633-2104996 bp Feature: domain Description: DUF1 566 Location: 21 04633-21 04996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: LT599585.1 Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid (373858 bp)
Overview 1 RT 1: 128872-133655 bp 2 RT 2: 252365-257973 bp 3 RT 3: 260781-266085 bp Neighborhood of RT #1 [128872, 133951] DDE_Tnp_IS66_C RVT_N RVT-GII GIIM IstB_IS21 DDE_Tnp_1 Neighborhood of RT #2 [252365, 258002] COG3907 LTA_synthase RVT-GII InsE TnpB_IS66 Neighborhood of RT #3 [260781, 266114] PRK10755 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 128872-129078 bp Feature: gene Location: 129794-129928 bp Ori: SBW85178.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 129800-129911 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12 9800-12 9911 bp Feature: gene Location: 130120-131781 bp Ori: SBW85179.1 Feature: domain Description: RVT_N Location: 130165-130408 bp Feature: domain Description: RVT_N Location: 130165-130408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130453-131089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130453-131089 bp Feature: domain Description: GIIM Note: maturase Location: 131146-131374 bp Feature: domain Description: GIIM Note: maturase Location: 131146-131374 bp Feature: gene Location: 132213-132425 bp Ori: SBW85180.1 Feature: domain Description: IstB_IS21 Location: 132216-132357 bp Feature: domain Description: IstB_IS2 1 Location: 132 2 16-132 357 bp Feature: gene Location: 132569-133951 bp Ori: SBW85181.1 Feature: domain Description: DDE_Tnp_1 Location: 132965-133655 bp Feature: domain Description: DDE_Tnp_1 Location: 132 965-133655 bp Feature: gene Location: 252365-253114 bp Ori: SBW85314.1 Feature: domain Description: COG3907 Location: 252389-253061 bp Feature: domain Description: COG3907 Location: 2 52 389-2 53061 bp Feature: gene Location: 253170-255128 bp Ori: SBW85315.1 Feature: domain Description: LTA_synthase Location: 254010-254817 bp Feature: domain Description: LTA_synthase Location: 2 54010-2 54817 bp Feature: gene Location: 255350-257116 bp Ori: SBW85316.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256034-256724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 56034-2 5672 4 bp Feature: gene Location: 257284-257661 bp Ori: SBW85317.1 Feature: domain Description: InsE Location: 257314-257599 bp Feature: domain Description: InsE Location: 2 57314-2 57599 bp Feature: gene Location: 257658-258002 bp Ori: SBW85318.1 Feature: domain Description: TnpB_IS66 Location: 257685-257973 bp Feature: domain Description: TnpB_IS66 Location: 2 57685-2 57973 bp Feature: gene Location: 260781-261761 bp Ori: SBW85322.1 Feature: domain Description: PRK10755 Location: 261141-261600 bp Feature: domain Description: PRK10755 Location: 2 61141-2 61600 bp Feature: gene Location: 261801-261935 bp Ori: SBW85323.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 261807-261918 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 61807-2 61918 bp Feature: gene Location: 262127-263788 bp Ori: SBW85324.1 Feature: domain Description: RVT_N Location: 262172-262415 bp Feature: domain Description: RVT_N Location: 2 62 172 -2 62 415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262460-263096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 460-2 63096 bp Feature: domain Description: GIIM Note: maturase Location: 263153-263381 bp Feature: domain Description: GIIM Note: maturase Location: 2 63153-2 63381 bp Feature: gene Location: 264346-265689 bp Ori: SBW85325.1 Feature: domain Description: LZ_Tnp_IS66 Location: 264487-264700 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 64487-2 64700 bp Feature: domain Description: zf-IS66 Location: 264727-264853 bp Feature: domain Description: zf-IS66 Location: 2 6472 7-2 64853 bp Feature: domain Description: DDE_Tnp_IS66 Location: 264895-265669 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 64895-2 65669 bp Feature: gene Location: 265779-266114 bp Ori: SBW85326.1 Feature: domain Description: TnpB_IS66 Location: 265797-266085 bp Feature: domain Description: TnpB_IS66 Location: 2 65797-2 66085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695), DDE_Tnp_1 (pfam01609), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), LTA_synthase (cd16015), InsE (COG2963), TnpB_IS66 (pfam05717)
PRK10755 (two-component system sensor histidine kinase PmrB), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: LT599584.1 Pseudomonas veronii 1YdBTEX2 genome assembly, chromosome: PVE_r2 (844748 bp)
Overview 1 RT 1: 408043-411410 bp Neighborhood of RT #1 [408043, 411433] IS5 RVT-GII GIIM IS5 Feature: gene Location: 408043-408414 bp Feature: gene Location: 408603-409136 bp Ori: SBW84538.1 Feature: domain Description: IS5 Location: 408666-409110 bp Feature: domain Description: IS5 Location: 408666-409110 bp Feature: gene Location: 409133-410401 bp Ori: SBW84539.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409346-410003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093 46-410003 bp Feature: domain Description: GIIM Note: maturase Location: 410081-410303 bp Feature: domain Description: GIIM Note: maturase Location: 410081-4103 03 bp Feature: gene Location: 410398-410538 bp Feature: gene Location: 410894-411433 bp Ori: SBW84541.1 Gene: insH5 Feature: domain Description: IS5 Location: 411083-411410 bp Feature: domain Description: IS5 Location: 411083 -411410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)