myRT

myRT report for GCA_900094185.1_Ef_DMG1500501

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Seq: LT603678.1 Enterococcus faecium isolate Ef_DMG1500501 genome assembly, chromosome: 1 (2944104 bp)
Overview 1 RT 1: 963933-968733 bp 2 RT 2: 2816384-2821186 bp Neighborhood of RT #1 [963933, 968733] HTH_XRE Rol_Rep_N Rep_trans RVT-GII Neighborhood of RT #2 [2816384, 2821200] HTH_XRE Rol_Rep_N Rep_trans RVT-GII RVT-GII HNHc ArdA Feature: gene Location: 963933-964187 bp Feature: gene Location: 964443-965627 bp Feature: domain Description: HTH_XRE Location: 964473-964617 bp Feature: domain Description: HTH_XRE Location: 964473-96461 7 bp Feature: domain Description: Rol_Rep_N Location: 964650-964914 bp Feature: domain Description: Rol_Rep_N Location: 964650-96491 4 bp Feature: domain Description: Rep_trans Location: 964938-965550 bp Feature: domain Description: Rep_trans Location: 964938-965550 bp Feature: gene Location: 966505-966909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966838-966889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966838-966889 bp Feature: gene Location: 967620-968162 bp Feature: gene Location: 968593-968733 bp Feature: gene Location: 2816384-2817568 bp Feature: domain Description: HTH_XRE Location: 2816414-2816558 bp Feature: domain Description: HTH_XRE Location: 281 641 4-281 6558 bp Feature: domain Description: Rol_Rep_N Location: 2816591-2816855 bp Feature: domain Description: Rol_Rep_N Location: 281 6591 -281 6855 bp Feature: domain Description: Rep_trans Location: 2816879-2817491 bp Feature: domain Description: Rep_trans Location: 281 6879-281 7491 bp Feature: gene Location: 2818448-2818717 bp Feature: gene Location: 2818762-2819169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2818780-2819164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 8780-281 91 64 bp Feature: gene Location: 2819313-2820356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2819319-2819517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 931 9-281 951 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2820072-2820237 bp Feature: domain Description: HNHc Note: nucleases Location: 2820072-2820237 bp Feature: gene Location: 2820544-2820684 bp Feature: gene Location: 2820697-2821200 bp Feature: domain Description: ArdA Location: 2820715-2821186 bp Feature: domain Description: ArdA Location: 282071 5-2821 1 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: LT603680.1 Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 3 (54641 bp)
Overview 1 RT 1: 16136-31528 bp Neighborhood of RT #1 [16136, 31647] TraG_VirD4 TraG_VirD4 RVT-GII RVT-GII HNH_4 TraG-D_C VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 16136-16651 bp Feature: gene Location: 17094-18482 bp Feature: domain Description: TraG_VirD4 Location: 17229-17907 bp Feature: domain Description: TraG_VirD4 Location: 172 2 9-17907 bp Feature: domain Description: TraG_VirD4 Location: 18294-18459 bp Feature: domain Description: TraG_VirD4 Location: 182 94-18459 bp Feature: gene Location: 19177-19572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19516-19564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19516-19564 bp Feature: gene Location: 19707-21092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19713-20250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19713-2 02 50 bp Feature: domain Description: HNH_4 Location: 20844-20949 bp Feature: domain Description: HNH_4 Location: 2 0844-2 0949 bp Feature: gene Location: 21218-22009 bp Feature: domain Description: TraG-D_C Location: 21221-21527 bp Feature: domain Description: TraG-D_C Location: 2 12 2 1-2 152 7 bp Feature: gene Location: 22006-24537 bp Feature: gene Location: 25676-27370 bp Feature: domain Description: VirB4 Location: 25994-26678 bp Feature: domain Description: VirB4 Location: 2 5994-2 6678 bp Feature: gene Location: 27638-27871 bp Feature: gene Location: 28058-29902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28373-29111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8373-2 9111 bp Feature: domain Description: HNHc Note: nucleases Location: 29669-29822 bp Feature: domain Description: HNHc Note: nucleases Location: 2 9669-2 982 2 bp Feature: gene Location: 30122-30442 bp Feature: gene Location: 30442-31647 bp Feature: domain Description: Glucosaminidase Location: 30718-31114 bp Feature: domain Description: Glucosaminidase Location: 30718-31114 bp Feature: domain Description: Peptidase_M23 Location: 31291-31528 bp Feature: domain Description: Peptidase_M2 3 Location: 312 91-3152 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696), VirB4 (COG3451), HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)